Query= MSMg01no268_o23.b1 MSMg01no268_o23.b1 CHROMAT_FILE:
MSMg01no268_o23.b1 PHD_FILE: MSMg01no268_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:18 2005
(559 letters)
>mm_chr15_78822146_78823104
Length = 959
Score = 930 bits (481), Expect = 0.0
Identities = 536/555 (96%), Gaps = 4/555 (0%)
Strand = Plus / Plus
Query: 5 gaattctgcagacctgcactgtcaggctgctgcccagttgcagactaaagtgctctgcaa 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctgcagacctgcactgtcaggctgctgcccagttgcagactaaagcgctctgcaa 264
Query: 65 gaatgacccagaggtgtgcagtgcaggtctcatgcacagcccagcagcttggtcatcagg 124
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 265 gaatgacccagaggtgtgcagtgcaggtctcatgtacagcccagcagcttgatcatcagg 324
Query: 125 tcagagggtacagctgaactgcagagaaggccctttagagggagttgcttctacccaccc 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagagggcacagctgaactgcagagaaggccctttagagggagttgcttctacccaccc 384
Query: 185 cctagaaagcagtcctgtgatcacattactttggggaatgctgggaaatgtagtttggag 244
|||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||
Sbjct: 385 cctagaaagcagtcctgtaatcacattgcttcagggaatgctgggaaatatagtttggag 444
Query: 245 ctgaatgacagtgaacacagctgagctgccactgtcactcaacatctcaacaactactcg 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 ctgaatgacagtgaacacagctgagctgccgctgtcactcaacatctcaacaactactcg 504
Query: 305 ctgtccactcaggtttctgtgtgtctcctcgtcagcagtgcctaccctgtgccctaaacc 364
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtccactcaggttacagtgtgtctcctcgtcagcagtgcctaccctgtgccctaaacc 564
Query: 365 cagggtctggccttacgcatttttaaggtttcttttgatgtgtgtgtgtgtgtgtgtgtg 424
||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 565 cagggtctggccttacgcatttttaaggtttcttttg--g-g-gtgtgtgtgtgtgtgtg 620
Query: 425 tgtgtgtctacctacctgggtgtatctgtatgtgttacctgtatatatgtctgtgcacca 484
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 tgtgtgtctacctgcctgggtgtatctgtatgtgttacctgtgtatatgtctgtgcacca 680
Query: 485 tgtgcatgcagtacccatggaggtcagaagagggcgtcagatccccctagttgtgaactg 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgcatgcagtacccatgaaggtcagaagagggcgtcagatccccctagttgtgaactg 740
Query: 545 ccatgccagtgctgg 559
|||||||||||||||
Sbjct: 741 ccatgccagtgctgg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_o23.g1 MSMg01no268_o23.g1 CHROMAT_FILE:
MSMg01no268_o23.g1 PHD_FILE: MSMg01no268_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:18 2005
(268 letters)
>mm_chr15_78971457_78972124
Length = 668
Score = 511 bits (264), Expect = e-149
Identities = 267/268 (99%)
Strand = Plus / Minus
Query: 1 cctgtgctccaagagcccggctcgcaccacgacctccctccttccgtggcccgtgctcac 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cctgtgctccaagagccctgctcgcaccacgacctccctccttccgtggcccgtgctcac 409
Query: 61 ttgtcctcgttgtctgacatgatgccttctccgcccggggcgcagagcagagaacgcgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttgtcctcgttgtctgacatgatgccttctccgcccggggcgcagagcagagaacgcgcg 349
Query: 121 cctttgcccctcgccgcaccacgcgtagtttgcgcttgcgccgtgacccaggcgcagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cctttgcccctcgccgcaccacgcgtagtttgcgcttgcgccgtgacccaggcgcagtta 289
Query: 181 cttccgggaagcagcggccgaccagacgctaatgcgcgtgcgtggaggcgtgtcgctagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttccgggaagcagcggccgaccagacgctaatgcgcgtgcgtggaggcgtgtcgctagt 229
Query: 241 taccatggtaacaaggagcgattagtga 268
||||||||||||||||||||||||||||
Sbjct: 228 taccatggtaacaaggagcgattagtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
