BAC Information

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BAC

Clone NameMSMg01-269C08
Chromosome15 (Build37)
Map Location 37,787,185 - 37,787,505
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313
Downstream geneLOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269C08.T7 (MSMg01no269_c08.b1)MSMg01-269C08.TJ (MSMg01no269_c08.g1)
ACCAG409355AG409356
length738732
length of high quality
(start - end)
324 (41 - 364)291 (68 - 358)
definitionCHROMAT_FILE: MSMg01no269_c08.b1 PHD_FILE: MSMg01no269_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:32 2005CHROMAT_FILE: MSMg01no269_c08.g1 PHD_FILE: MSMg01no269_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTTCTGTTTACTTAGAAAGCTTTCTACTAGAGCAAGGGACTATGTAGAT
ATTTCAAGGATGTCTACATTGAAGTTAATACTCAGGAACCCAAAGTGCTC
ACATATTTTCATGCTAGAAGAGGTGGTCACACAAGAACCAAGCAATAAAT
GGGATTATGCCCCATGTCTGGCTCACAGGGGCCTGAGGTGCTCAGTGCTG
TCCAGTGTTCTCATATTTCTCATTGGAATGGATACACTTGAAGATAAGCA
GAACAGAATGCTTTCATTGGTTCCTTAATAAAAGAATTCTCTGAAACTGC
CCAAATTCCTGAGAGAGGGAGTGCATAACCATTAGAAATGCTTCATGAGG
AAATGACACAGATTAGTGTCAACCTGAAAAACTATTCGAATGTAAGGCTA
GTGATCTAAATCATAGCTATCCACTTTGACCTTGGCAATAATAATAATAA
TAATAATAATAATAATAATAATAATAAACAGAAAACAAGCAAAAAGATAT
CAGTCAGTCAAGTAATCTGTTAGAGCAGACTGGCATGGCGTCCACGGTGT
ATAATCATGGCTGCATTGGTGTTCATTCCCATCATGAAGAGAATGCATAG
CACACATTCCCGGGACAGAAAATCCTGCACAGTTGCAGTCTCACTCCAGG
GATGTGCCAAATTCCTTGCCTCCTGGCATTGTTGGCTN
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTGTGTAGACCAGGCTGGCGGTGAACTCAGAA
ATCCTCCTGTCTCTGCCTCTGGGTGCTGGGATTAAAGGTGTGAGCCACCA
CGCCTGGCCGGCATGTTTTCTTAAAAACTACTTCAGTGGTAAAATATTCA
GCACTTTGGAAGCTGAGGCAGGGTTTCAAATTTAAGGCCAGTCTGGGCAA
CATAGCAAGAGCCTGTCTGACTTTTTCCCCTCTAAAGGAAGTCAGTCATG
ATTCAGCAGTGGAAAGTTTTTTGTGGAGAGAACAGGAAAGGAGTCTATAA
TCTCCGGATATTTATCGGCTGCGCGCTTACAGTCAGTGTTTTGTGTTGGC
GATCCCCATGCACTCCTAAAGATTGTACATACAGTCTTTACGTCTCTGTG
TAAGTCAGGTACCTGAACTGCAATATTAGAATGTTATTTATCTTGACATG
TTAGTTAAAAAACAAGGTTTTAAGTTCTTTCTTGAAGAANAAGAGATGAA
AACAGGGCAGGTGGATGTGGGTGCTGCCCAGACACTGGGGCTCTGCAGGG
CAGGAACTAAATTGTTGTGCCAGAGTCTACTGATTACAGTACTTGAGTAA
TTTGTCCATCGTGAGCAGCCAGTACTTTTTTCTGCAGAGCAGCTGGCTCT
CTGATTTCTTTTCCCTGTCTTAACCACTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_c08.b1 MSMg01no269_c08.b1 CHROMAT_FILE:
MSMg01no269_c08.b1 PHD_FILE: MSMg01no269_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:32 2005
         (324 letters)



>mm_chr15_37786982_37787705
          Length = 724

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacttctgtttacttagaaagctttctactagagcaagggactatgtagatatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacttctgtttacttagaaagctttctactagagcaagggactatgtagatatt 263

                                                                       
Query: 64  tcaaggatgtctacattgaagttaatactcaggaacccaaagtgctcacatattttcatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaaggatgtctacattgaagttaatactcaggaacccaaagtgctcacatattttcatg 323

                                                                       
Query: 124 ctagaagaggtggtcacacaagaaccaagcaataaatgggattatgccccatgtctggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagaagaggtggtcacacaagaaccaagcaataaatgggattatgccccatgtctggct 383

                                                                       
Query: 184 cacaggggcctgaggtgctcagtgctgtccagtgttctcatatttctcattggaatggat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacaggggcctgaggtgctcagtgctgtccagtgttctcatatttctcattggaatggat 443

                                                                       
Query: 244 acacttgaagataagcagaacagaatgctttcattggttccttaataaaagaattctctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acacttgaagataagcagaacagaatgctttcattggttccttaataaaagaattctctg 503

                                
Query: 304 aaactgcccaaattcctgaga 324
           |||||||||||||||||||||
Sbjct: 504 aaactgcccaaattcctgaga 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)