BAC Information

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BAC

Clone NameMSMg01-269E01
Chromosome15 (Build37)
Map Location 8,984,834 - 8,985,116
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr70, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619
Downstream geneRanbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269E01.T7 (MSMg01no269_e01.b1)MSMg01-269E01.TJ (MSMg01no269_e01.g1)
ACCAG409428AG409429
length728732
length of high quality
(start - end)
512 (43 - 554)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no269_e01.b1 PHD_FILE: MSMg01no269_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:40 2005CHROMAT_FILE: MSMg01no269_e01.g1 PHD_FILE: MSMg01no269_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGTACCCCATTTTAAGTAGGGTTATTTGGTTCCCTG
GTGTCTAACTTTTTGAGTCCTTTGTATATATTGGATAGTTGCCCTCTATC
GGATTTAGAATTGGTACCATCTTCTGAGGAACTTCCATGTTTTTTTTTTT
TTTTCCACAAAGGCTGTACCAATGTCCTTTCCTACTAATAGTGTACACAC
CAGGGCTTCTTTTCCCCCGCATGACTGTCAACGTGTGTTTTTTATTCTCT
TTCCTTTTTTTTGTTTTTTTGTTTTTTTTTGTTTGTTTTTTGTTTTTTGT
TTTTTTTTGCTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGG
CTGTTTGGAACTCACTTTGTAGACCAAGCCGACCTTGAACTCAGAAATCC
GCCTGCCTCTGCCTCCTGAGTGCTAGGAATAAAGGTGTGTACCACCATGC
CCGGCTATTCTTTTTCTTAATATTAACCTTCTTACTCCTAAGAGGGGACA
TCTCATTGTGTTTTGGTATTAAGACAGGCTCTCATGTATCCTAGGCTAAC
CTTGAACTTACTATATAGCTAAGGATGCCCTGACCTCCTGGTCTTCCTGC
CTCTATTCTCCAGGTGCTGAGATGACTGGTGTATCTTACTATGCTGGTTT
TTATGTGATGCTGGAGATGGAACCAACC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAGATTAACCACTGCTGTCTATTTCCAG
GAAAGAAAACTCCACTAGTTGTTTCAGAGAACAGGAATCCTAAGTTTTCC
TCTGATAGTGTTTGTCAAGAGCTGTGTGTGTGTGTCTGTGTGTAGGCCTG
CACATGCACATGTGTGAAGATCAGAGAACAGCTTGCTGGAATCGGTTTCC
TTCTTCCACCATGTGGGTCCCTCGGGTCAAGCTCAGCTCACCAAGCTTCA
CAGCTAGAGCTTTACCTCTGTGTCATCCCCCCATCCCTCCACTCCCTCCT
CCAGCCCCCCTTTCTCTGGGCCACCACCAGTTATTTGCAACACAGTTGTA
TATCTGCTGTGGCAAAAGACTTTTGGAATGCCACTTGGCAGGAATCTGAC
ATTAGGCCATGACAAAGAAGTAAGTTCAGGCATAGACCTGAGAGCTGACT
TTGGCCAAGGACAAGGACAAGGAAGTAAGAATCTGATTCTAGGGTAAAAC
AAAGAAGTAGGCTCAGATATCTTGATCATCCTGAGAAACAGCAATCACCT
GAGAGATCATGGTGAAAGAAAATAAAACTTGAGACCTGTGATTCATGTAA
TTTATGTCAAATAGCCCANAGAGTTGTTTGTGAGCTCTGAAACCTGGGGC
TGAGAACATAGCAGAACAGGCCAGGACATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_e01.g1 MSMg01no269_e01.g1 CHROMAT_FILE:
MSMg01no269_e01.g1 PHD_FILE: MSMg01no269_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:40 2005
         (285 letters)



>mm_chr15_8984811_8985495
          Length = 685

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagattaaccactgctgtctatttccaggaaagaaaactccactagttgtttcagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 306 cagagattaaccactgctgtctatttccaggaaagaaaactccactagttgttttggaga 247

                                                                       
Query: 61  acaggaatcctaagttttcctctgatagtgtttgtcaagagctgtgtgtgtgtgtctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 acaggaatcctaagttttcctctgatagtgtttgtcaagagctgtgtgtgtgtgtctgtg 187

                                                                       
Query: 121 tgtaggcctgcacatgcacatgtgtgaagatcagagaacagcttgctggaatcggtttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgtaggcctgcacatgcacatgtgtgaagatcagagaacagcttgctggaatcggtttcc 127

                                                                       
Query: 181 ttcttccaccatgtgggtccctcgggtcaagctcagctcaccaagcttcacagctagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttcttccaccatgtgggtccctcgggtcaagctcagctcaccaagcttcacagctagagc 67

                                                      
Query: 241 tttacctctgtgtcatccccccatccctccactccctcctcca 283
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 66  tttacctctgtgtcatccccccatccccccactccctcctcca 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)