BAC Information

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BAC

Clone NameMSMg01-269I06
Chromosome15 (Build37)
Map Location 26,133,980 - 26,134,630
singlet/doubletsinglet
Overlap genenone
Upstream gene4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622
Downstream geneAK162044, Fbxl7, LOC622531, LOC625311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269I06.T7 (MSMg01no269_i06.b1)MSMg01-269I06.TJ (MSMg01no269_i06.g1)
ACCAG409609AG409610
length737735
length of high quality
(start - end)
656 (42 - 697)567 (71 - 637)
definitionCHROMAT_FILE: MSMg01no269_i06.b1 PHD_FILE: MSMg01no269_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:00 2005CHROMAT_FILE: MSMg01no269_i06.g1 PHD_FILE: MSMg01no269_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCTTCTTAAACCTAGGAATGAGAAATTGACACCCTTTTGAAAGAAGCT
AATGAAACCATGTTCCTTCTTGACTTCATTTGAGCAAATGCTGGTATTTC
CAGGGCAGATAGGAAGAGAGCTAAGTAATGCATCATGGCTGAATTCATTC
CGAGGGCAGAAAGAGTGAGACTCATGGATAACTTGCCTTTTGTGAAATAG
CATCTTTTTGTGCATAGATATGAGTAATACGATCTTCATGTTGATCTCAA
ATTCACTCTTTGTATAAATACTCTGTAATATTTCTATGTGAGATTTGTTT
CAAATAGTCTAGGGGCCTCGGGTGGTTGGCGTGGCTACAGATGAGAGTGA
ATTGTCAAAACAAAAAATATATCAAGCTTCATTTCTATGCTTATACATGT
CTGAAGCTTTTCATACCCAGTGAGCATAAGGGTGAAGGCATAACAAGTAT
GATGATTCTCTCAGTAAATAAAAATATATATATATAAAAACTCAAATGTC
TCCAGAGACAAGCAGTTTATACTAATGATCTGTGATGCTGATTTCCTATG
TACTGAACCCTGCAGGGGATCAGTCAATGTCTGCAGTCTGAGGAAACAAA
GACCTTCAATCTTGAAAGAACATGACAAGCAGCTTGACACCGCTGAGGTC
TGAGCATCCTGGATCACACATCATCTTGAGGTCCCCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACAGCAGCACCAAGGGGATACAGTGTTTG
AGGATGTGAAATATGCAAGACTGAGGGGATCATAGACAGCAGGTAAGGCA
ACGTGGGACAGGGTCAGAGTTTGTGCAAGGAGCCCTTAGATGCCACTATG
CGAACTTGTAAAGATGAAGTCTAAACTGCAGTGGAGACCCCAGGAAGATG
AAGATGCCAGAACCAAGAGCCAAGAGGAGTCTGCTGAGGAAAGCCACATG
GAATGAAACAAAGCCACAGGAGAGGTTGTGTGTGCTGCACGCAATAGATC
TGAAAGGGTGGGGCTACCAAATCCTTCTGGCGGACTGATGACTCTATTGT
CAGCCTCATGTACTAAAACTGGAGCTACAGGATTTGGTGTTTGTCCTGCT
GGGTTTCAATCTTACTTTGGTCCCATTATTGCTCTGTATGCCTTCATCCT
TCCTTTCTGGAAATTCTGTGTTGTTGCATGTAGGAAATACATAATAACTC
ATTTTGGATTTCATAGTTAAAAGATTGCCTTGTGTATAAGATAGGACTTG
GACTTTGGATTTGTAAACAATATTAGAAGTTTTTAAGACCACAGTGGCCT
TTAGTGTTAGACTGAATGTGTTTCTACATTATATGATGGGCCAGAAGCCA
GAAGGGTATAATATTCTGACTTAAAAGTGATGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_i06.b1 MSMg01no269_i06.b1 CHROMAT_FILE:
MSMg01no269_i06.b1 PHD_FILE: MSMg01no269_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:00 2005
         (656 letters)



>mm_chr15_26133776_26134831
          Length = 1056

 Score = 1214 bits (628), Expect = 0.0
 Identities = 646/652 (99%), Gaps = 1/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccttcttaaacctaggaatgagaaattgacacccttttgaaagaagctaatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccttcttaaacctaggaatgagaaattgacacccttttgaaagaagctaatga 264

                                                                       
Query: 65  aaccatgttccttcttgacttcatttgagcaaatgctggtatttccagggcagataggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaccatgttccttcttgacttcatttgagcaaatgctggtatttccagggcagataggaa 324

                                                                       
Query: 125 gagagctaagtaatgcatcatggctgaattcattccgagggcagaaagagtgagactcat 184
           ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagagctaaataatccatcatggttgaattcattccgagggcagaaagagtgagactcat 384

                                                                       
Query: 185 ggataacttgccttttgtgaaatagcatctttttgtgcatagatatgagtaatacgatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggataacttgccttttgtgaaatagcatctttttgtgcatagatatgagtaatacgatct 444

                                                                       
Query: 245 tcatgttgatctcaaattcactctttgtataaatactctgtaatatttctatgtgagatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatgttgatctcaaattcactctttgtataaatactctgtaatatttctatgtgagatt 504

                                                                       
Query: 305 tgtttcaaatagtctaggggcctcgggtggttggcgtggctacagatgagagtgaattgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtttcaaatagtctaggggcctcgggtggttggcgtggctacagatgagagtgaattgt 564

                                                                       
Query: 365 caaaacaaaaaatatatcaagcttcatttctatgcttatacatgtctgaagcttttcata 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaaacaaaagatatatcaagcttcatttctatgcttatacatgtctgaagcttttcata 624

                                                                       
Query: 425 cccagtgagcataagggtgaaggcataacaagtatgatgattctctcagtaaataaaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 cccagtgagcataagggtgaaggcataacaagtatgatgattctctcagtaaataaaaaa 684

                                                                       
Query: 485 atatatatataaaaactcaaatgtctccagagacaagcagtttatactaatgatctgtga 544
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 a-atatatataaaaactcaaatgtctccagagacaagcagtttatactaatgatctgtga 743

                                                                       
Query: 545 tgctgatttcctatgtactgaaccctgcaggggatcagtcaatgtctgcagtctgaggaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgctgatttcctatgtactgaaccctgcaggggatcagtcaatgtctgcagtctgaggaa 803

                                                               
Query: 605 acaaagaccttcaatcttgaaagaacatgacaagcagcttgacaccgctgag 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acaaagaccttcaatcttgaaagaacatgacaagcagcttgacaccgctgag 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)