BAC Information

Click to search

BAC

Clone NameMSMg01-271D21
Chromosome15 (Build37)
Map Location 67,550,893 - 67,551,120
singlet/doubletsinglet
Overlap genenone
Upstream geneTg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000, EG665945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271D21.T7 (MSMg01no271_d21.b1)MSMg01-271D21.TJ (MSMg01no271_d21.g1)
ACCAG410852AG410853
length749750
length of high quality
(start - end)
168 (38 - 205)229 (434 - 662)
definitionCHROMAT_FILE: MSMg01no271_d21.b1 PHD_FILE: MSMg01no271_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:04 2005CHROMAT_FILE: MSMg01no271_d21.g1 PHD_FILE: MSMg01no271_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATGCAGG
CTTGTACACCACTCTGGAATCAGTCTGGCGGTTCCTCAAAAACTGGACTA
GAACTACGGTTGTATCAGCATACTTCCCTGGAATAATTAATAANTGTTTT
TTTGGTTCAAGTCCCCCGGTGGGTGGGGGGGGGTGGCGGAAGGAAGACCC
TAAACGGAAAAAACCTGTGTCCCCTCCCCAAAGAAGGGAACAAAAAGTGG
GCCCCTCCCCAAGGGGAAACCCTCCCTTTTAAAAAAAAATGTTTTTAATT
CCCACCCAAAGGGGGGCCGGGGGGNNTCTCCCTGGGGGGGGGGACTTTTT
CAAAAACCCCCCAAATTTTCTCCCGGGGGGTGTTTCCCCCCCCCCTTTCC
CCCAAAAAAATATTTTTTTTTCCCCTCCCTCCAAAAAAAAAAAAAGGGGG
GCCCCCCCCCCCCCTCTTTTTTAACCACCCCCCGAAGAGTAAAAAACATT
TTTTTTTAAAAAAAAATTGTTATAGGTTATTTTCCCCTCCCCCCCCTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGAATTTACATCAAGGCAGCCTTCTTACACTC
ACCCTTCAGGTCTCAGCCCAAAGTGACACTAAATAGAGCTCTCAGATTCT
TAGTCACCAACCAGGTACCATGGAGAATAAGAGCAAATATTGTGTGAAAC
AACTTGGCCTTCTGAAGGGAAAAGAGAAGAGATGGCTGAGAGCAGGAAAT
AATGCTATAAAAAGAAAGATATAGAGAGTGCTACTTGAGCATAGACACCA
TGTGTATATGTGCTGGATTTGTGGTTGGAAGGCAAAATTACCTCAGAGAA
TGCTTCTTANAATGACCCATANACAAGNGCCGTTCTAAAATATGAATAGT
TCTTTGACTTGTTTTGCATGATAAAAAAAAAAGCTTATGTATAAGGGACT
GCATTATTAAGCCTCTGAGGGCTGGAATCTCTTTTCACATTCTAGGGCAG
CCTTTCAATACTGCTTTTGATATTTGCTTTGGTTTGCAATGGAGCCAGTA
TCACCCAGGGATTAGGCAGAATGCTCCCCAATTTGATACAGCCATCAGTT
CTAATCACTGTACATGTCATTTAGATTCATGGCTTCAGTTCCAAAGGGCC
TCCTTGGGGAAGCTAGATATTCTAGTGTGCTGCAAATTTAGATGCCCTTT
TAATCCTACAGTGAATATTTACTGAGCACATATCAGAAAGTAAATCCTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_d21.g1 MSMg01no271_d21.g1 CHROMAT_FILE:
MSMg01no271_d21.g1 PHD_FILE: MSMg01no271_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:04 2005
         (229 letters)



>mm_chr15_67550693_67551320
          Length = 628

 Score =  397 bits (205), Expect = e-115
 Identities = 223/229 (97%), Gaps = 1/229 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatgtataagggactgcattattaagcctctgagggctggaatctcttttcacattct 60
           ||||| ||||||| | || ||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 201 cttatatataaggtattgtattattaagtctctgagg-ctggaatctcttttcacattct 259

                                                                       
Query: 61  agggcagcctttcaatactgcttttgatatttgctttggtttgcaatggagccagtatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agggcagcctttcaatactgcttttgatatttgctttggtttgcaatggagccagtatca 319

                                                                       
Query: 121 cccagggattaggcagaatgctccccaatttgatacagccatcagttctaatcactgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cccagggattaggcagaatgctccccaatttgatacagccatcagttctaatcactgtac 379

                                                            
Query: 181 atgtcatttagattcatggcttcagttccaaagggcctccttggggaag 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgtcatttagattcatggcttcagttccaaagggcctccttggggaag 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 628
Length adjustment: 9
Effective length of query: 220
Effective length of database: 619
Effective search space:   136180
Effective search space used:   136180
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)