Query= MSMg01no271_g02.b1 MSMg01no271_g02.b1 CHROMAT_FILE:
MSMg01no271_g02.b1 PHD_FILE: MSMg01no271_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:14 2005
(685 letters)
>mm_chr15_103342058_103343142
Length = 1085
Score = 1280 bits (662), Expect = 0.0
Identities = 676/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 5 gaattctgccactaggggggctatttttatctctggagccacccccgccactctgcccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgccactaggggggctatttttatctctggagccacccccgccactctgcccag 264
Query: 65 ccagctgccagtactagggctgctcagatagcaatgggaaccagggatggaggggaatgt 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 ccagctgccagtactagggctgctcagatagcaatgggaaccagggatggaggggaatat 324
Query: 125 atggtaaagttctggttgctcttggattctgcagctccaagctttgcatggtccttgccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggtaaagttctggttgctcttggattctgcagctccaagctttgcatggtccttgccc 384
Query: 185 ctgcctctgcttcctcccagcttgtgtggacttacaggggatagagaaaagccctagaca 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 ctgcctctgcttcctcccagcttgtgtggacttacaggggaaagagaaaagccctagaca 444
Query: 245 cttggagagattggaggttttccatgcatagctcaggttccatttgaggactgcatgaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttggagagattggaggttttccatgcatagctcaggttccatttgaggactgcatgaga 504
Query: 305 aaattgggtcctgggcactagtgggcatttgggactttgtttatggaagcctctcaatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaattgggtcctgggcactagtgggcatttgggactttgtttatggaagcctctcaatga 564
Query: 365 atatttgaaaactagctaaagggttggactaatggcaataaccatctgcacagatgtacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatttgaaaactagctaaagggttggactaatggcaataaccatctgcacagatgtacc 624
Query: 425 actgtatggttcccaaagtgctttcataactatctcatcaggtcctcactagacttctgg 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 actgtatggttcccaaagtgctttcgtaactatctcatcaggtcctcactagacttctgg 684
Query: 485 gaagtgtgtgttatttaccagatttaaacatggaaactagaactcagagaggattttccc 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 gaagtgtgtgttatttaccagatttaaacatggaaactagaactcagagag-attttccc 743
Query: 545 atggtcatacacagtcagcaaaagcgaggcaaataaattctcctgagttttacttaagtc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atggtcatacacagtcagcaaaagcgaggcaaataaattctcctgagttttacttaagtc 803
Query: 605 attttaaaatgagacttagctgatatccttgtttatttgtttccagtttctatgatcttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attttaaaatgagacttagctgatatccttgtttatttgtttccagtttctatgatcttt 863
Query: 665 ggatccttganattatctagg 685
|||||||||| ||||||||||
Sbjct: 864 ggatccttgaaattatctagg 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_g02.g1 MSMg01no271_g02.g1 CHROMAT_FILE:
MSMg01no271_g02.g1 PHD_FILE: MSMg01no271_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:15 2005
(260 letters)
>mm_chr15_103483259_103483918
Length = 660
Score = 427 bits (221), Expect = e-124
Identities = 247/261 (94%), Gaps = 10/261 (3%)
Strand = Plus / Minus
Query: 1 tacttctgcagattctgctgccaataccaaagatacctctatctatttgttcaacaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tacttctgcagattctgctgccaataccaaagatacctctatctatttgttcaacaaagg 289
Query: 61 taaactgggtaagatcatttcatctaagcctctccttatgtggatccaggattcagtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taaactgggtaagatcatttcatctaagcctctccttatgtggatccaggattcagtgca 229
Query: 121 ttctctacttccataactaaacatacttcagggagagaga-gagagagagagagagagag 179
|||||||||||||||||||||||||||| |||||| |||| | | | |||||
Sbjct: 228 ttctctacttccataactaaacatactttagggagggagatgtgtg---------gagag 178
Query: 180 agagagagagagagagagagagagagagagagagagagagagagagagcagactttggaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 agagagagagagagagagagagagagagagagagagagagagagagagcagactttggaa 118
Query: 240 gagtgggagggggaagtgaat 260
|||||||||||||||||||||
Sbjct: 117 gagtgggagggggaagtgaat 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 38
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space: 163401
Effective search space used: 163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
