BAC Information

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BAC

Clone NameMSMg01-271M02
Chromosome15 (Build37)
Map Location 88,684,939 - 88,685,074
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2
Downstream genePim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271M02.T7 (MSMg01no271_m02.b1)MSMg01-271M02.TJ (MSMg01no271_m02.g1)
ACCAG411220AG411221
length734819
length of high quality
(start - end)
353 (382 - 734)137 (70 - 206)
definitionCHROMAT_FILE: MSMg01no271_m02.b1 PHD_FILE: MSMg01no271_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:42 2005CHROMAT_FILE: MSMg01no271_m02.g1 PHD_FILE: MSMg01no271_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCACCATGGGACGCAGAATTGAACTAACTTATTTTTGGAGACA
GAGCTGTATAGCAATCTCTTCTGACTAAATATGAAAACATTAGCAAACTG
AATGTAACAGCATATTATAAGGAACACATACCACAAACAAATACAAAAGT
AGTTAAAAATTTCAAATTCAGTCAACATATCACACTGATAGAATGAAATT
GTCATGTATTTCCATTGACAGATAAAAATCATTTGATAAAATTCAAACCT
TCTGGAATAGGGAAAAAAGAAAGGATGGTATCTTTATATGGTATACTTGT
ATAAAAATAGCTTTGGTCTTCAGACATTGTTCAGTAGTTAAGAGCACTGA
CAGGTCTTTCAGAGGAGTTGGATTTAATTCCCAGCATCTACATAGCAACT
AGCAGCCACCTGCAGCTCTCGTTCCATCTGTAGCTCTCTGATGCCTTCTT
CTGGACTTCTCATGCACACACATAAAGCACACAGACACACTTGCAGGCAA
GCACACACATGAAGCACAGACACACATGCAGGCAAAACACTCATACATAC
TATTTTTTTTAAGTACTAAAAATATCTCTAATGACATCATGAAAATTGTC
ACTATGCAATAAACAGATGCCACAATAATTTTATCTTANAAGTTTCCAGG
CTGGGCATGATGGCATCCACCTTTTATTTCCCCT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTAATCTCCAAGGTCAGAAGAGACAGTAGG
AGCAGGAGGGGATTCCAGTGCCGAAGGGTTTGGGGACTGTAGGCTACTAA
GGCTACTAAGCAGAGTGGGGCAGGGGTGGTGTGGAGCGGGGGTGGGGGTG
GGGTGTTTCTTTTTTCTTTTTCTCTTCTCGTTCTTCCGCTTTTTTCTTGC
ATTTCCTTTGCCCGCTTCTCATCCTTTGATTCTTTTTTCCTCTTTTGCTT
TTGTTCTTTCCGCTCGTTTTTTTTTTTTATCTGCCATTCTTGCCTTCCAG
TAGCTCTTGTTTTTTTTTTCCCCCCCCCCCCCCCCCTTTCTTTCCTCCTT
CTTTTTCTCCGTTTGCCTTTCTTTTCCCCTTTTTCATTTTCCCATCACAC
TTTCCCCGCCCCCGCTTTTTGCTTTCCTTCCCCTCCCACCCGCCCTTTTT
CGCTTGTCTCCCCTTCCTTCTTGACTTTCTTTTTATGCCGCCCCTACCCT
TTTCTTTTTTTTTCCCTTTTCCTTTCTTTTTCTCTTAGCTTTCCCTTGTC
TCACTTTTTGTCCTTTTTCCCCCCCTTTTTTTTCCTTTTTCTCCTTTTGC
CCTCCCTGTTGCTTCACTGTATCACCCTTTCCTTCCCGTTTTTGCTGCCT
TTTCCTCCGCTCCTATCGTTACGAGTTTCCGTCCCTTCTCTTTCTTTCTC
CCTTTTCCCCCCGTTCCTCTTGTTTTGCCCTTTTTTTTCCTTCTCTCCCC
CCTTTTGCCCTTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_m02.g1 MSMg01no271_m02.g1 CHROMAT_FILE:
MSMg01no271_m02.g1 PHD_FILE: MSMg01no271_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:42 2005
         (137 letters)



>mm_chr15_88684739_88685275
          Length = 537

 Score =  240 bits (124), Expect = 3e-68
 Identities = 133/136 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaatctccaaggtcagaagagacagtaggagcaggaggggattccagtgccgaagggt 60
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agtaatctccaaggtcagaaaagacagtaggagcaggaggggattccagtgcagaagggt 260

                                                                       
Query: 61  ttggggactgtaggctactaaggctactaagcagagtggggcaggggtggtgtggagcgg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttggggactgtaggctactaaggctactaagcagagtggggcagggctggtgtggagcgg 320

                           
Query: 121 gggtgggggtggggtg 136
           ||||||||||||||||
Sbjct: 321 gggtgggggtggggtg 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)