BAC Information

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BAC

Clone NameMSMg01-272H13
Chromosome15 (Build37)
Map Location 98,818,146 - 98,818,431
singlet/doubletsinglet
Overlap genenone
Upstream geneCol2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a
Downstream geneEG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272H13.T7 (MSMg01no272_h13.b1)MSMg01-272H13.TJ (MSMg01no272_h13.g1)
ACCAG411746AG411747
length762757
length of high quality
(start - end)		293 (66 - 358)286 (69 - 354)
definitionCHROMAT_FILE: MSMg01no272_h13.b1 PHD_FILE: MSMg01no272_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:38 2005CHROMAT_FILE: MSMg01no272_h13.g1 PHD_FILE: MSMg01no272_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGCTCTTCCCTCAGGACCCCGCCATGCTTCCCACCTTGATGAACTGAAC
AGTCCTGCCAGGGACTGCACCTCCGTATCTGTGTATGCCTCAATCAAACG
TTGTCCTTTATAAGAGTTACCTTGTCATGGTGTCTCTTCACAGCAACAGA
AACCCTAACTAAGATAAGAACACTGCTGCTCTTGCAGAAGACTCAGGTTC
AATTCCCAGCACCCATACGGTGGCTCACAATTGGTCTGCATCTCGAGTTC
CACAGGATCCAATGCCTTCTTCTAGTCTCCAAAGGCACCAGGCATGCAAG
TGGTCATTTTATATACATGCCCCCACAAACATCCATAAACATAAAAATGT
TTAAATTTTTAATGTACAGTTTGCAATTACAATTAAACATAACTTCTGCA
GGAAAATTAAAACCACTTCAGACAAAAACTAGCTGTCTCCAACAGAATGG
GAAAGGCATAGTGGAAGAGAAGAGCAGCAGGGGAGGGCAAGGCAGTGCGG
ACCTACGGAAAAGTAATTGCTTTCCCCATCCTGTGAGGACTTCCAAATAG
ACATTTTGAAAGTGCTAGCTTTCATCTGCTAAATCACTAAAACACCCTGA
ATTATTTAGCAGCAGTTTAATTAACCTTTCTTCACTTTTTTCTAGATAGT
TAAATGTTTGTTTTAGAAAATATCATGAAAAATATAGTCATAATTTACTA
AGGCACCTTTAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXGGGAGGCACACACACATTTTTTTCTTCTTGTT
TTGTTGACAGGGTTTTTACCTTGTAGCCAGGGTGCCCTGGAACATGACAG
CCTCCTCCTTTGGCCACCAGAGTGCTAGGGACAGGTATGTCTCACCATGC
CCAAGTCAGATTACTTTTCTAAGAAAACCAACTAGTAAGTAGCATGAAAA
GGGAGTGTTGCTAAGAAAGCCCCTTTTCACGGTGACGAGATTTCTCCTCC
TCCTTCCCTTCTCCTTCTCTCCAACCTCAGCCTGCAAGAGCGTTTCTTGG
CGTATTTCTGGTTTTCTCCCCCACCGGCCTTTGCCTCCTGACACTGAAGA
AATTTCTTAGCAGACAAATGTATCTGATGGTGTGTGAGAGGTTAAGTCTC
TGCTACCTGCAAACTGAATCAATTCAAGCCAGATTAGATTATACTAAAGG
CAAGTTTATGAGGGCGAGCTTACTGAGGCCAAGGGAGTTAACATGGGGAG
AGAAGGAGGGAGAAAGGGAGAGGGGGAAAGGCTACCTTCTCCTTCTTGCT
CCTCCTTCTGTTACTTCTTATATTAATCAATAAATATATTCCTGATCCAT
ACAACCTTTATTTAGTGTGCGATGTTAGTTGTTGCTTACTCGCTTATCTC
ACAAACTTATATTACTTTTTAAACTGTAGCATTGGTCTCTCTTCTTTCTA
TTCGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_h13.g1 MSMg01no272_h13.g1 CHROMAT_FILE:
MSMg01no272_h13.g1 PHD_FILE: MSMg01no272_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:38 2005
         (286 letters)



>mm_chr15_98817946_98818631
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggaggcacacacacatttttttcttcttgttttgttgacagggtttttaccttgtagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggaggcacacacacatttttttcttcttgttttgttgacagggtttttaccttgtagcc 260

                                                                       
Query: 61  agggtgccctggaacatgacagcctcctcctttggccaccagagtgctagggacaggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtgccctggaacatgacagcctcctcctttggccaccagagtgctagggacaggtat 320

                                                                       
Query: 121 gtctcaccatgcccaagtcagattacttttctaagaaaaccaactagtaagtagcatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gtctcaccatgcccaagtcagattacttttctaagaaaaccaactagtaagtagcgtgaa 380

                                                                       
Query: 181 aagggagtgttgctaagaaagccccttttcacggtgacgagatttctcctcctccttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggagtgttgctaagaaagccccttttcacggtgacgagatttctcctcctccttccc 440

                                                         
Query: 241 ttctccttctctccaacctcagcctgcaagagcgtttcttggcgta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctccttctctccaacctcagcctgcaagagcgtttcttggcgta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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