BAC Information

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BAC

Clone NameMSMg01-273B17
Chromosome15 (Build37)
Map Location 95,751,590 - 95,751,843
singlet/doubletsinglet
Overlap geneTmem16f
Upstream geneTmem117, LOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, LOC100043329
Downstream geneD030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273B17.T7 (MSMg01no273_b17.b1)MSMg01-273B17.TJ (MSMg01no273_b17.g1)
ACCAG412201AG412202
length711713
length of high quality
(start - end)
250 (69 - 318)254 (433 - 686)
definitionCHROMAT_FILE: MSMg01no273_b17.b1 PHD_FILE: MSMg01no273_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:25 2005CHROMAT_FILE: MSMg01no273_b17.g1 PHD_FILE: MSMg01no273_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTTTTCTCTCCCATATTGACTTCCTTATTTCATGGAGCTGATT
TTTGTGTACTCTGGGAACTCCCCTAGTCCATCCATGCTCTGTTATTTCTT
TGCAAATTGTTGGGGGTTGGTCTGGTGCTGTTTGTATTTGTATGCTAAAT
TCTATACCCCAAGATCTGGGTTGCCCCAAGATGAGCAAATTTCCATGTGC
ACCAGCCTTTAACCACCCCCCACACCCTCAATTTAAAATCATTTGTTAAA
TAAAAATGGCTACAACCATTCTTAGGTGGAGTCTGAGTCTGGGGGTTGCA
GGAGGGACTTTTTTGAACACCCCCCCCCCCCAGAGAAGGGGGGCATGGAG
AAGATAGAATAGTCATGACGAACCAGCAACATGTGCCTGAGATGCCTCCC
CAGGACACCAGCCTGTTGGAGCAGGAATAACCCAGAAAGATTCAAACAAC
TATTTGGGGAGTGTCTTATTCAGGGTTTGTATTCCTGCACAAATCATCAT
GATCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCA
CATTGATGTTCATCACCACAGGAAGTCAGGACAGGAACTCACACAGGACA
GGAACTTGGAGGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCTTA
CTGGCTTGCTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGGGTCCCCGTGAGAAAGCTGGTG
CATTTCCATGTTTAGAAATGACTTTTTCTTAAATTAAGAGATGTATGATT
GAAAACTCAAGTGGCTTTGTGGTTTTGTTGTCTTACTTGTACGAGCTTAT
CCCATATAATGTCGGAAGGGGGAATAACGCAGTACCTCATAACCTGTTTG
CGTTGGGTACTGGAATTTAAATGCTAGCTGCATCTTAGATAGTGGTTCTC
AACCTGTGGGTCGTGATTTTTTGGGGTTAAATGACCTTTGCACAGGGGTC
ATTTATTTACCTCGTACCNGNNACTATTCACATTATGATTCATAACTAGC
AAAATTACAGTTATGAGGTAACAACAAAAAAGATTTTATGACTACGCTTT
TTATCACTACAACAAATGAGGAACTGTATTAAAGGGTTATAGTACAAGGG
AAGTTGAGAACCACTGATCTAAGGGGGGGTTGCTGGGTGCTGGGAACACT
TGCTTTTGAGGTGCTCTTGTTAATTGTATTATCATGCATCTGCTTTTGGT
GTTCTCTGTTGTCTCCTGATGGACTGGCCTCTGTCCAGGTGTAATTGGGT
AGATGGTGGCTCACGGACTTCAGTGCTGAGGTGATGACATTTTTCAAGCC
CTGAGCATGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_b17.g1 MSMg01no273_b17.g1 CHROMAT_FILE:
MSMg01no273_b17.g1 PHD_FILE: MSMg01no273_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:25 2005
         (254 letters)



>mm_chr15_95751390_95752043
          Length = 654

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttatgactacgctttttatcactacaacaaatgaggaactgtattaaagggttatag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttatgactacactttttatcactacaacaaatgaggaactgtattaaagggttatag 260

                                                                       
Query: 61  tacaagggaagttgagaaccactgatctaagggggggttgctgggtgctgggaacacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaagggaagttgagaaccactgatctaagggggggttgctgggtgctgggaacacttg 320

                                                                       
Query: 121 cttttgaggtgctcttgttaattgtattatcatgcatctgcttttggtgttctctgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttgaggtgctcttgttaattgtattatcatgcatctgcttttggtgttctctgttgt 380

                                                                       
Query: 181 ctcctgatggactggcctctgtccaggtgtaattgggtagatggtggctcacggacttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctgatggactggcctctgtccaggtgtaattgggtagatggtggctcacggacttca 440

                         
Query: 241 gtgctgaggtgatg 254
           ||||||||||||||
Sbjct: 441 gtgctgaggtgatg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)