BAC Information

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BAC

Clone NameMSMg01-273M03
Chromosome15 (Build37)
Map Location 7,594,376 - 7,595,029
singlet/doubletsinglet
Overlap genenone
Upstream geneFyb, EG665511, 4921505C17Rik, Osmr, Lifr, Egflam
Downstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273M03.T7 (MSMg01no273_m03.b1)MSMg01-273M03.TJ (MSMg01no273_m03.g1)
ACCAG412674AG412675
length736738
length of high quality
(start - end)
318 (40 - 357)665 (70 - 734)
definitionCHROMAT_FILE: MSMg01no273_m03.b1 PHD_FILE: MSMg01no273_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:11 2005CHROMAT_FILE: MSMg01no273_m03.g1 PHD_FILE: MSMg01no273_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCTGGAAAAGTGTTTTCTGAGAGCACAGAGAAGCTGTGTTCCAGAGCTGG
CCAAGGCTGTATCTCGAGATTGGTAATGTTGGCAAGAGCCACCCAGGTGG
TCCTGATTTTGAAGGCATAAAGGGGTCATGGAGAGCAGCTGAGGTTTGTC
ACTGTAAGAGGCTAGGAGAAGCCACTGGTGAAATTTCAGCCTTGGTGGTA
GTTGAAGGCCCAGAACATGCAGAGAAGTTGAGGTTTGGCACCAGGAAGAA
AGCCCGTGAAAGGCTATTGGTGAAAAGTGCAGCCCAGCTACAGCAAGGAA
CCTGAGTTATTTTGGACATCGCCACTGCCATGGGATGCCCACCAAGAGCT
GCAGCAGCAGTGGAGTGGAGCTGGCCAGAGCCCAGAAGACAAGCTGTGTG
TGCTGCCGAGGACAGAGCTGGAGAAGTGGCCGAAGCCCTTTAAAGGCGCC
CAGAAGATTGTGAATCTTAGATAATTGGGCATTGAGTTATTTAAACTGGA
GTTTGGTTTTGCTTGGTTTATACTGTGAGCTGTGCCCTGGTTCTTCCTTC
TTGAAGAAGGTATTTAATTTAATTTTGATTGTTTAAAGGAGCCCACAGAT
GAAAGACTGAACTTTGAAAAGAGATTTCGGAATTTGAGAGAGATTGGACA
TTTTACAGACTGACATTTTAGTACACCGGAGTCTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAGTGCTATCTAAACTGGTTTCCAGGGAAT
AAAAGCCAGGCAGTGGTCCTCATCCTTCCTGATGCTGTGATCCTTTAGTG
CAGTTCCTCAGGTTGTGGTGACCCCCAAACCATAAAATTATTTTCGTTGC
TATTTCATGTCTGTAATTTTGCTACTGTTATGAATTTTAATGTAGATATT
TTGGAAGTTAGAGGTTTGCCAAAAAGGGTCATGACTCACAGGTTATATGT
TCAGGCATACATGTGTGTAGGGACAAGCATGTGTGTGCATGCATGGGGAG
GCCAGAATATAACTTCAGGGTTATCCTTGAAGGTTGACCTCGTCAGGGTC
TCTCATTGGCCAGCAGCTTGCCAAGTAAACTAGGTTGGCTGGCCAGTAAC
CCCAAAGGATCTGTTGCCTCCACTTCCCCAATGCTGGGATTACAAGTGAG
CAGCACTGAGCCCCTACTCCATGTGCATTTTAAGGGCCGAGCTTGGGTCC
TTACATTTTCACAACATGCATTCTGTTGACTAAACCAGCTCCCCATGCCG
AGCCATAAGCAATGCTCAGTCATAGTGAAAGAAGTAGATGTGGCAGAACT
GGCCATAGAAAAGGAGGGAAGAGCATGGGGGAAGAATCCACCCAGAGTGC
TCTGAGGACAGAGACTAAAACCACCAGTGACGCAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_m03.g1 MSMg01no273_m03.g1 CHROMAT_FILE:
MSMg01no273_m03.g1 PHD_FILE: MSMg01no273_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:11 2005
         (665 letters)



>mm_chr15_7594179_7595242
          Length = 1064

 Score = 1197 bits (619), Expect = 0.0
 Identities = 645/655 (98%), Gaps = 4/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgctatctaaactggtttccagggaataaaagccaggcagtggtcctcatccttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 caagtgctatctaaactggtttccagggaataaaagccaggcagtggtcctcatccttcc 257

                                                                       
Query: 61  tgatgctgtgatcctttagtgcagttcctcaggttgtggtgacccccaaaccataaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 258 tgatgctgtgatcctttagtgcagttcctcaggttgtggtgacccccaaaccataaagtt 317

                                                                       
Query: 121 attttcgttgctatttcatgtctgtaattttgctactgttatgaattttaatgtagatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attttcgttgctatttcatgtctgtaattttgctactgttatgaattttaatgtagatat 377

                                                                       
Query: 181 tttggaagttagaggtttgccaaaaagggtcatgactcacaggttatatgttcaggcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttggaagttagaggtttgccaaaaagggtcatgactcacaggttatatgttcaggcata 437

                                                                       
Query: 241 catgtgtgtagggacaagcatgtgtgtgcatgcat---ggggaggccagaatataacttc 297
           |||||||||||||||||||||||||||||||||||   |||| || ||||| ||||||||
Sbjct: 438 catgtgtgtagggacaagcatgtgtgtgcatgcatgggggggggggcagaagataacttc 497

                                                                       
Query: 298 agggttatccttgaaggttgacctcgtcagggtctctcattggccagcagcttgccaagt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agggttatccttgaaggttgacctcgtcagggtctctcattggccagcagcttgccaagt 557

                                                                       
Query: 358 aaactaggttggctggccagtaaccccaaaggatctgttgcctccacttccccaatgctg 417
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaactaggttggttggccagtaaccccaaaggatctgttgcctccacttccccaatgctg 617

                                                                       
Query: 418 ggattacaagtgagcagcactgagcccctactccatgtgcattttaagggccgagcttgg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggattacaagtgagcagcactgagcccctactccatgtgcattttaagggccgagcttgg 677

                                                                       
Query: 478 gtccttacattttcacaacatgcattctgttgactaaaccagctccccatgccgagccat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 678 gtccttacattttcacaacatgcattctgttgactaaaccagctccccatgccaagccat 737

                                                                       
Query: 538 aagcaatgctcagtcatagtgaaagaagtagatgtggcagaactggccatagaaaaggag 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aagcaatgctcagtcatagtgaaagaagtagatgtggcagaactggccatagaaaaggag 797

                                                                  
Query: 598 ggaagagcatgggggaagaatccacccagagtgctctgaggacagagactaaaac 652
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 798 ggaagagcatgggggaagaatccacccagagtgctctgaggacagagac-aaaac 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space:   690370
Effective search space used:   690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)