BAC Information

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BAC

Clone NameMSMg01-273M19
Chromosome15 (Build37)
Map Location 23,149,610 - 23,149,901
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273M19.T7 (MSMg01no273_m19.b1)MSMg01-273M19.TJ (MSMg01no273_m19.g1)
ACCAG412704AG412705
length749757
length of high quality
(start - end)		324 (35 - 358)293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no273_m19.b1 PHD_FILE: MSMg01no273_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:14 2005CHROMAT_FILE: MSMg01no273_m19.g1 PHD_FILE: MSMg01no273_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAACC
CATGGTCTGCTCAAGGACTTTCTGGGACGTTGGAACACTGGTGAAGGCTT
AGCTATGTCAGAATTCAATCTTAAAAGGCACATATAATAAGATAATACTA
AAAGAGAGCATGTGGATCCATACACCAGACTAACGTGGGAATAGAGTATG
AGTATGTGGTTGATGAGAATGCCAAACTCCAGGAGGTGAGTTTCCATGAA
ACTCTCCACCTCGTGAGTGGCTTCCAGGCCTCCTGGCCTATCAAGCCGAC
TCGACCGGAGTGCGTAGCAGTTGGGCATGGTGGCACACACCTTTAATCCC
AGCACTATGGAGGCAGAGGCCGGCAGATTTCTGAGTTCGAGGCCAGCCTA
GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAAATATTTAAGAA
ACTAATACCACCTGATGTGCCATGATTAACATGATCCCTTGCATCTAGGA
GGTAACTCTATCTTATGCTACTATTTATGTAAAACCTGTGAGAAGTTTGA
TTAGCTCAGAAGAAGGATAAAATTTTCTTCTCTTTGACCACATGTTAATT
ACTCAAGAATTAGCTTTGATTACATAATATAAAAATACACCCTAAATATA
TATTGCACATGCATGCAAAGTCTCCAATGGTATCACATTAGTAATAAGTT
GATGAAAACAGTCAGATAANAATCCATTTTTACTTTTTTCTCACTTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATTTCAGCACATTACAGAGAGGCAAAATGCTTAAC
AAGTGTTCACCTAAGGCGGGAAGTTCACACAAGAAAGGAAAGATTTTTAG
AAATCCTAGTGAAAGATTACTAAACTAAGACGCTCTTCTGATCAGAAGAG
CTAGGAGAAGGGGAGGGGCCCAAGGCTATCAGAGCCTCATATAGATGTCA
GTTCACAACCGGAATTGCATGAAATAGGGAGGCTTATAAAGGATAATAGT
GGTTTCAAACTAAGAGATGATAAGGAGATTGAAGTGACAGCAAAGGTAAT
TGCAGATGTGTTTAGCCCCCCCCCCCGATAAAAAATAACATCTATCAAAG
TATGACTAAATGGCAGAAGTAAGACATAGATGCAATCATGTATATTCTGA
AAATAAAGGAATCTGTGTTGTAAATTGAAAGCAGGGTAAAGCAAAACATA
AAGGTTGACCATGATTACTGAAAAAAAAAAAAAGAATGAACTTACAATTA
TTCAGTTGATAGATGAAGTATGATACAGACATCCCGAGGGATTCTGAAAC
AATTTTTGGATATCTTAATTGAAATATCACCATGTGAAGTCTCAGAGAAA
TAGAAGAACTTTCCATGTATATTCTGGAGTTCACAATAAATATTTGATTC
ATTTTATTTTATAAACACAAAAGATATCAGCACAAATGTAATAATGACAG
AAATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_m19.g1 MSMg01no273_m19.g1 CHROMAT_FILE:
MSMg01no273_m19.g1 PHD_FILE: MSMg01no273_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:14 2005
         (293 letters)



>mm_chr15_23149410_23150102
          Length = 693

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttcagcacattacagagaggcaaaatgcttaacaagtgttcacctaaggcgggaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 catttcagcacattacagagaggcaaaatgcttaacaagtgttcacctaaggcgggaagt 433

                                                                       
Query: 61  tcacacaagaaaggaaagatttttagaaatcctagtgaaagattactaaactaagacgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcacacaagaaaggaaagatttttagaaatcctagtgaaagattactaaactaagacgct 373

                                                                       
Query: 121 cttctgatcagaagagctaggagaaggggaggggcccaaggctatcagagcctcatatag 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttctgatcagaagagctcggagaaggggaggggcccaaggctatcagagcctcatatag 313

                                                                       
Query: 181 atgtcagttcacaaccggaattgcatgaaatagggaggcttataaaggataatagtggtt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgtcagttcacaaccggaaatgcatgaaatagggaggcttataaaggataatagtggtt 253

                                                               
Query: 241 tcaaactaagagatgataaggagattgaagtgacagcaaaggtaattgcaga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcaaactaagagatgataaggagattgaagtgacagcaaaggtaattgcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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