BAC Information

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BAC

Clone NameMSMg01-275M10
Chromosome15 (Build37)
Map Location 100,317,111 - 100,317,422
singlet/doubletsinglet
Overlap geneBC035295
Upstream geneFaim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1
Downstream geneTcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275M10.T7 (MSMg01no275_m10.b1)MSMg01-275M10.TJ (MSMg01no275_m10.g1)
ACCAG414134AG414135
length736740
length of high quality
(start - end)		317 (44 - 360)---
definitionCHROMAT_FILE: MSMg01no275_m10.b1 PHD_FILE: MSMg01no275_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:34 2005CHROMAT_FILE: MSMg01no275_m10.g1 PHD_FILE: MSMg01no275_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAGGCTTAACGGGGAGGCCGAACGTCACTGTTGTTAGAGTGACAGG
TGTGAGGCCTTCGGAGCACGCCAGAGAGCTCACCAAGAATGAGACTAGCG
AGGCCTGGCCTCCTGCCACCCTTGTCCAACCTTGCTAGGCCTCAATTGTC
TACACACTAGAAATATTGCAGCTACCTCATGGATGGGTCGAGAAACTCAT
TCATATTCTCTAACCCGAGGCTTCATGAACACCAGGTGAGTGCTCTAACC
ACTGTACCCTCAGCTCTGGGAAATTTGAGAACTCACAGAAACGATTGATA
GAGGGTCAATAGTGCTAAGGCAGGCCGCGGGTGTCTCAGATGAGTCTTTT
GGTGCTATCAGTGACGTGTATGTAGTAAGTGGGGTATTTTTTTTAAAAGA
CTGATTTATTGGGCCAGATCTGGTAGTGTATGCTTTAATACTAGTACTTA
TGAGAGAGGTAGGAAGCTATCAGTGACCTGAATCTACCTGGTCTACACAG
CACGTTCAGTTCATCCATGGGAACCATCATGTGATCCCTGTGTACCAAAC
CCATCCACCACTGCTCTTAAGTGTTAAGTCTTCTCTCCGGAACCTACTGG
TATCCCTGTTTATGAATTTTACCATGAAATAATGCTACTCTCTGCATCAA
GGAGACTGTGTCAGACCTCTGGGGTGACTATGTGCA

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCGAAAGGGAATGGAGGCTGTAGCTAC
TAATAGTGGGGCTTGTTCACTTAAAATAAGCTATAGAGGAGGAACGTGGA
AGCTACAGCTTAGGAAAGAGTCTAAGCAGCAGGCCTGCCTCCTTGCCAGA
GTGTCCAGTGGGAATTCGGCTGGTACCCAATAGAGACTGTTACCTGGTGG
ACAAATGGGGGGGAGCTAATAAAAGGGGGCAGGCAGATGAAAGAAGAACT
GTTAGAAGCATTGAATCTTTATGGTCAAGACCTACAGCATCGAGAGAAGA
AACTGTTGCTGCTTGTCCCCCCCCACCACGGAACCAGAGAGAATGGGGTG
GTCTCCAGAGGGGACACCACAGTGAAAAAGAATGAAGATGGGGACTCTGA
CCTTGAAAGCAACACTTACTATCCCGCCTTGGGCCTAGGGAACTGATATT
GCCTCCTCTCAAGCTGCGCACACACTTGCCACATTACTCATGTGCAGGAT
GTATTATGTGGATGTATGTACACACATATACTGCCGTATCACATGTGTGG
AGGTCAGAGGCCAACTTTTGGGAGTCAGTTCTCTCCTTCCACCATGTGGT
CTCCTAGGATCCACCTCAGATCAACTTGAGACTCGATGGCAAGCGCTTTA
ATCACTTCCCAGCCCTCCCAGAGCATCTCTTCAGCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_m10.b1 MSMg01no275_m10.b1 CHROMAT_FILE:
MSMg01no275_m10.b1 PHD_FILE: MSMg01no275_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:34 2005
         (317 letters)



>mm_chr15_100316907_100317622
          Length = 716

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaggcttaacggggaggccgaacgtcactgttgttagagtgacaggtgtgagg 64
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaggcagaaaggggaggccgaacgtcactgttgttagagtgacaggtgtgagg 264

                                                                       
Query: 65  ccttcggagcacgccagagagctcaccaagaatgagactagcgaggcctggcctcctgcc 124
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttcggagcaggcc-gagagctcaccaagaatgagactagcgaggcctggcctcctgcc 323

                                                                       
Query: 125 acccttgtccaaccttgctaggcctcaattgtctacacactagaaatattgcagctacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acccttgtccaaccttgctaggcctcaattgtctacacactagaaatattgcagctacct 383

                                                                       
Query: 185 catggatgggtcgagaaactcattcatattctctaacccgaggcttcatgaacaccaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catggatgggtcgagaaactcattcatattctctaacccgaggcttcatgaacaccaggt 443

                                                                       
Query: 245 gagtgctctaaccactgtaccctcagctctgggaaatttgagaactcacagaaacgattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagtgctctaaccactgtaccctcagctctgggaaatttgagaactcacagaaacgattg 503

                        
Query: 305 atagagggtcaat 317
           |||||||||||||
Sbjct: 504 atagagggtcaat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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