BAC Information

Click to search

BAC

Clone NameMSMg01-276O15
Chromosome15 (Build37)
Map Location 39,902,679 - 40,087,521
singlet/doubletdoublet
Overlap geneLOC670013
Upstream geneCthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276O15.T7 (MSMg01no276_o15.b1)MSMg01-276O15.TJ (MSMg01no276_o15.g1)
ACCAG414962AG414963
length737743
length of high quality
(start - end)		693 (45 - 737)298 (437 - 734)
definitionCHROMAT_FILE: MSMg01no276_o15.b1 PHD_FILE: MSMg01no276_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:56 2005CHROMAT_FILE: MSMg01no276_o15.g1 PHD_FILE: MSMg01no276_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,902,679 - 39,903,366)(40,087,224 - 40,087,521)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGTATCTCCACATTTTAAAGCTGGTGTTTGACTATCTGTATAGA
ATTTACACAGTGAGAATAAATCCCTTTTAACAGCAGTATCTAGACTACCA
TAGAAAAGATTAAGAACCCATTAACTGAAGTAGTCTACTGAAAGGGGCCT
GTGCTGCACTCTTCTTCTATGTTCTTGCTGGTGTGCTTACTTGCCAAGGC
CTCCAGAGTGATTGCAGTCCGTCCTATCAAGGACTCATCACCTCTCAAGG
AACATGGCTCCCACTGAGGGTTAAAGCCCCAAACCACACAATGGCTTCTA
ATTTCTGACAGATTTGTTTCTCATTCTCCCCCTTACCCTCCTCACAGTAA
CCTCCTTATTTATTAGTCTCCAAGTCTGTCAACACACACTTGCCTAAGGC
TTTCATCGTCTCTGCTCTGGTTAGTCACCTCACCCCCTTTAGCTCTTTGC
TTAAGTACCCATCACTTTCTTATTGAGGCCCACCCACCATCCCATTTAAA
ACAGGACTGTAAATTCTAGTGTACCCAATTCCTGTGTCCTACTCTGCTTT
CTGGATAGCAGTAGCTCTCTAACACGGATTCTTCTACTATAGTTCACCAT
GGTTCTCTTAGGGTGGAATTTTTCTTTTTCATTGTCCACTGATTTATGCT
AAGCACTCAGTGTGCTGTTAAGATATGGCTTGTCCTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACAGTCATAACCAAGGTCCG
CTGATCATAAACTGCTCTTTTTTCCCAAATTATATTCCTCACAAATCTGC
TGATATGGAATAATTAGAAATCGGTTGCCTGCATTTACAGTAATATTTGC
ATGACTTTAGATCTCCACCTACTGATCTAGAGGCTGGCAGGAAATGTACA
TTTTGTACATTTCTAAATATACCTTGCCTGCAGAGATAATGGTTTATATT
GTGATGGTAAGGAGGTTTTTATTTGAAAAAAAAAAAAAACAAAAAACAAA
GAGGTGTCACTTGTTTTTTTTGCACCCCCCCCCCAGGCAGCTTGTGTCAT
TCCTATTCAGAACTTACTGTTTGCAGATTACATATCCCCTCTCCTCTGTA
AGAGATAATGATCTGCATCTTGTAAACTGCTTAAAGAGTGTTTATTTTCT
CTTCTTAAAAAGGTTTGAAACACATTTTATAGAATGCAAGCGTTTCGAAA
GTAAGTGTAAACTGAGTAAAATATAGCATCCCATCTATTACCATATCTCC
GAGTACAATCATTAAATTAGTGATAAAGGAGCAGTTATTTATGCTGAGCA
AGCAGAGCCATCAGCCCTGGTGCAAACCCATCCTCTGGTACAGAAAGCAC
AGGGGTCCAACTTCAAACCTGCCATCAGTCGTTAGGCAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_o15.b1 MSMg01no276_o15.b1 CHROMAT_FILE:
MSMg01no276_o15.b1 PHD_FILE: MSMg01no276_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:56 2005
         (693 letters)



>mm_chr15_39902475_39903567
          Length = 1093

 Score = 1268 bits (656), Expect = 0.0
 Identities = 680/688 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaagtatctccacattttaaagctggtgtttgactatctgtatagaatttacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagtatctccacattttaaagctggtgtttgactatctgtatagaatttacac 264

                                                                       
Query: 65  agtgagaataaatcccttttaacagcagtatctagactaccatagaaaagattaagaacc 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgagaataaatacattttaacagcagtatctagactaccatagaaaagattaagaacc 324

                                                                       
Query: 125 cattaactgaagtagtctactgaaaggggcctgtgctgcactcttcttctatgttcttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattaactgaagtagtctactgaaaggggcctgtgctgcactcttcttctatgttcttgc 384

                                                                       
Query: 185 tggtgtgcttacttgccaaggcctccagagtgattgcagtccgtcctatcaaggactcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtgtgcttacttgccaaggcctccagagtgattgcagtccgtcctatcaaggactcat 444

                                                                       
Query: 245 cacctctcaaggaacatggctcccactgagggttaaagccccaaaccacacaatggcttc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 cacctctcaaggaacatggctcccactgagggttaaagccccaaaccacacactggcttc 504

                                                                       
Query: 305 taatttctgacagatttgtttctcattctcccccttaccctcctcacagtaacctcctta 364
           ||||||||||||||   | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 taatttctgacagaagcggttctcattttcccccttaccctcctcacagtaacctcctta 564

                                                                       
Query: 365 tttattagtctccaagtctgtcaacacacacttgcctaaggctttcatcgtctctgctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttattagtctccaagtctgtcaacacacacttgcctaaggctttcatcgtctctgctct 624

                                                                       
Query: 425 ggttagtcacctcaccccctttagctctttgcttaagtacccatcactttcttattgagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggttagtcacctcaccccctttagctctttgcttaagtacccatcactttcttattgagg 684

                                                                       
Query: 485 cccacccaccatcccatttaaaacaggactgtaaattctagtgtacccaattcctgtgtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cccacccaccatcccatttaaaacaggactgtaaattctagtgtacccaattcctgtgtc 744

                                                                       
Query: 545 ctactctgctttctggatagcagtagctctctaacacggattcttctactatagttcacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctactctgctttctggatagcagtagctctctaacacggattcttctactatagttcacc 804

                                                                       
Query: 605 atggttctcttagggtggaatttttctttttcattgtccactgatttatgctaagcactc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atggttctcttagggtggaatttttctttttcattgtccactgatttatgctaagcactc 864

                                       
Query: 665 agtgtgctgttaagatatggcttgtcct 692
           ||||||||||||||||||||||||||||
Sbjct: 865 agtgtgctgttaagatatggcttgtcct 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no276_o15.g1 MSMg01no276_o15.g1 CHROMAT_FILE:
MSMg01no276_o15.g1 PHD_FILE: MSMg01no276_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:56 2005
         (298 letters)



>mm_chr15_40087024_40087721
          Length = 698

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctctcctctgtaagagataatgatctgcatcttgtaaactgcttaaagagtgtttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccctctcctctgtaagagataatgatctgcatcttgtaaactgcttaaagagtgtttatt 439

                                                                       
Query: 61  ttctcttcttaaaaaggtttgaaacacattttatagaatgcaagcgtttcgaaagtaagt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgtcttcttaaaaaggtttgaaacacattttatagaatgcaagcgtttcgaaagtaagt 379

                                                                       
Query: 121 gtaaactgagtaaaatatagcatcccatctattaccatatctccgagtacaatcattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtaaactgagtaaaatatagcatcccatctattaccatatctccgagtacaatcattaaa 319

                                                                       
Query: 181 ttagtgataaaggagcagttatttatgctgagcaagcagagccatcagccctggtgcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttagtgataaaggagcagttatttatgctgagcaagcagagccatcagccctggtgcaaa 259

                                                                     
Query: 241 cccatcctctggtacagaaagcacaggggtccaacttcaaacctgccatcagtcgtta 298
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cccatcctctgttacagaaagcacaggggtccaacttcaaacctgccatcagtcgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |