BAC Information

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BAC

Clone NameMSMg01-277I01
Chromosome15 (Build37)
Map Location 9,647,490 - 9,647,782
singlet/doubletsinglet
Overlap geneC230086A09Rik
Upstream geneSlc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r
Downstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277I01.T7 (MSMg01no277_i01.b1)MSMg01-277I01.TJ (MSMg01no277_i01.g1)
ACCAG415384AG415385
length845761
length of high quality
(start - end)
---293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no277_i01.b1 PHD_FILE: MSMg01no277_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:39 2005CHROMAT_FILE: MSMg01no277_i01.g1 PHD_FILE: MSMg01no277_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCGTTCTCTTCTTTTTTTNTCCACGCAGNCGGGGGGGGTAAAAAGGGTC
TAAAATTGAGGCGGCTAACGAGGGCTAAATTTCGAGNNAGAGNGANNNNN
NGNNATTAGCGAAAAAAGGGGNNNAGGGNANGGGANNNNNNGGGAGNNAA
NNNNNGGTTTTCCCCGGAAGAGGGAGGTTTAGGGGTGTATGTGATGTAGG
ATTGGTAAAGATNTTTTNNNAGTATGTTGGGTGGGTTTTTGGATTATTGA
AAGAGGATTTTGGGTTATAGAAGATTTGAAATTTTATGAGGTTTTTTTTG
TAAAATATAGATAATAAGAAGAAGATGATGATAGTATGTTAAGGAAAAAG
AAGGAGGGGATTTTTTATTTTGAGGNGAGGGGGGAAAGGAGAGGGAGGAA
GTTTTTTTTGCCTCTGGCCCAAGGCGGAGGAGCGTTGATATAATTAGAAT
TGTGTTTTGTATTAGGAAAAAGAAAAAAAAAAAGTGCGGGGGGGGGGGGG
GGGAAAAAGAGCATATTGAATCTGGGACAGTTTGATGAAAAAGATAAGGA
TGATAGAAATGGGAGGGGTGAAGGGCATAGGGTTAAAGAAGAGAGGGAGA
GGGATTATATGTGGGAGGAAGAAAAAGAGGTGGGGGGAAAGAGAATGGGA
TAAGGAGGAATAATATTGAGAGGAAAAGAGGAGAGGAGAAGAGGAAAAAG
TCGGGAAAGGGCAAGATGAAGGAGGGATATGGAATGCGTGGGGAGATGGG
AGAAGGCGTAGATGGGTGATGAGCATGGGAAATTAATTAAAGTGTGAGAG
CCTGTGAAGTAAAGTCTAATAGGGAATGAATCATTAATAACCACA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTAATTTGTGAGTACAAGCA
TTGGATAAATGTGGAAGCTGTATCTTACCGCTGATTCCAGTTTCTTTATG
TCACTTTTAGATCTGTCCCTCTGAGATCCTTAGCATAGCTTCTTTTTTTC
CTTAAGCTTATCTCTTCTCAGATCTCATGCTCTGCCATCTAAATAGAGAC
TGGCTTCTCTCCTGCATCTTTCCACTGGCCTCTAGTTTCTCCTGTTTTAA
GTCAATAGTAGGTAAACTGTAGATAATCTAATGTCAGGGCAGATGCCTCA
TGACAATATACTAGATATGGTTAACACAGTTCCTCTGTGGATGGTCCCAT
CTACAGCTACTCTGTTCTCCCTCACAATGGTGCAGGCTACTCTAGGTCCT
CCCAAATGGGCATATGGCTTCCTAGGGCAGTGTCCCAGTCTTTGCTAGGA
ACTTAGCAGCTGAAAGTTGGCCCTACCTTCCATGACTCAGCAGAGGTCTG
ACCTTGCATCAGCACAGGTCTTCCCAAAAGATGAGCACCAAAGTTCAGTG
AAATAAATGGTCCCTCAGCATGAAATTCATAGCCCTTTGAAATTTATCAT
TAAAAATGAAAGATACATTTTGTGTGTGTAGCAACTGAATAATCAATTCT
CATCTGCATGTCTTTAAGTAGCCATTAGAATGGCACAGTAGAGTTGTATA
AAATATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_i01.g1 MSMg01no277_i01.g1 CHROMAT_FILE:
MSMg01no277_i01.g1 PHD_FILE: MSMg01no277_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:39 2005
         (293 letters)



>mm_chr15_9647290_9647982
          Length = 693

 Score =  536 bits (277), Expect = e-157
 Identities = 289/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttaatttgtgagtacaagcattggataaatgtggaagctgtatcttaccgctgatt 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||
Sbjct: 201 tttgttaatttgtgagtacaagcattggataaatgtggaagctgtagcttattgctgatt 260

                                                                       
Query: 61  ccagtttctttatgtcacttttagatctgtccctctgagatccttagcatagcttctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagtttctttatgtcacttttagatctgtccctctgagatccttagcatagcttctttt 320

                                                                       
Query: 121 tttccttaagcttatctcttctcagatctcatgctctgccatctaaatagagactggctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tttccttaagcttatctcttctcagatctcatgctctgccatctaaatagaggctggctt 380

                                                                       
Query: 181 ctctcctgcatctttccactggcctctagtttctcctgttttaagtcaatagtaggtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcctgcatctttccactggcctctagtttctcctgttttaagtcaatagtaggtaaa 440

                                                                
Query: 241 ctgtagataatctaatgtcagggcagatgcctcatgacaatatactagatatg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtagataatctaatgtcagggcagatgcctcatgacaatatactagatatg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)