BAC Information

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BAC

Clone NameMSMg01-278G02
Chromosome15 (Build37)
Map Location 13,612,684 - 13,612,973
singlet/doubletsinglet
Overlap genenone
Upstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC666708, LOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278G02.T7 (MSMg01no278_g02.b1)MSMg01-278G02.TJ (MSMg01no278_g02.g1)
ACCAG416020AG416021
length725727
length of high quality
(start - end)
293 (383 - 675)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no278_g02.b1 PHD_FILE: MSMg01no278_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:41 2005CHROMAT_FILE: MSMg01no278_g02.g1 PHD_FILE: MSMg01no278_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATGTTTTCTGTCTGTGTGAATGTACTATGGAAAATACTCAGTG
GCAAAGAATTTGTGGGGACAACAGTATGGAAAGAAGATAGACTCTCTAAT
ATTTGATTGGGAAAAATATATGATGATATCTTTCACATTAGTAGCAACAG
GAGTAAGAGGCTGCTTTGTAGTAGAGCCATGAATGTGATAGTGAACAGGG
CTGTGAAGAACAGGGAGGTTGCAAAATACTTAACAGGGGTTGAATCTAAG
AATCCAAATGCATTACATTTCACTTGTACTAAAATGAAGACAAGACACAA
CATGAGGACTTTTGGTTTTAAACTCCTTATTCTATTATTTTTATACCCAA
ATAAATCTTTTGGACATTAAGATTAGTATAAATCAGAAATGAGAACAGCA
ATCTAGCTCTGAGATATAATTTTAGGAGAAATCAGTATATGTATGTGTGT
GTATACATATACATATGTTATATATATATATATTACAGATTAATGTAGTT
CTCGTACCCCACCAAAGAAGCTTCTTTTCACACAGATAGAGACTATGATA
GAAAGCCAAAAATAGCAAAATGCAAGAGAAAAACTTATGCTGAGTTTCTC
AACTCAAACACACACACACACACACACACTCACTCACACACTTACACACA
CACCCACATATATATATCAGAGGGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGGCCCATGACTGCACAAAA
TGTTGAGAATACATAGCCTAAAACATTACATTTACACTATATCTGTAATG
CTCAAAGAACCACAACAGCTTAGTAGGAAGAAAATGAATGATCTAAATAT
AGGGGAAAGGGCTGTGAAATGATATATTTTAAGCACACACAACCATGGCA
AGTGTAAACTTAAGTCAGTTGTGCTTCCTTGCTCTATGCCTACATAAGGT
TGGGAAGGCTAAGAATAAGCTATGGATAAAGAAGGGTCTGATCTGGTCTT
AGTGATTAACTATTTATTTTTATCACCCCCCCCCCCACGAGGAGATAGTA
TAATATTCACTTTTTTCCTCCACTGATGAACTCACTAGCCCCATTATATA
CTTTTAAACTCAAATTCATATAGATGAACATATTTAAACTCAGTGGGACA
CAATTATGTCATGAATATGGAAAAGATATTTGTAAGGAAGATGTGGACTG
GAAATGGAGGAGAAAAAGAAGAGAAAGCATGGATGACCTGGGCATCCCAA
CAGAGACATGAATGGGGTCCCCCAGAGATGTAAATGACAAGGTCATGTTA
CTATGTACAAATTTGGGACAGTCCTACTAGACTGTAGATTTAAAATTAGT
CAACATAATTTCTCAAGTGAAAACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_g02.g1 MSMg01no278_g02.g1 CHROMAT_FILE:
MSMg01no278_g02.g1 PHD_FILE: MSMg01no278_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:41 2005
         (292 letters)



>mm_chr15_13612484_13613175
          Length = 692

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaggcccatgactgcacaaaatgttgagaatacatagcctaaaacattacatttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaggcccatgactgcacaaaatgttgagaatacatagcctaaaacattacatttaca 260

                                                                       
Query: 61  ctatatctgtaatgctcaaagaaccacaacagcttagtaggaagaaaatgaatgatctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatatctgtaatgctcaaagaaccacaacagcttagtaggaagaaaatgaatgatctaa 320

                                                                       
Query: 121 atataggggaaagggctgtgaaatgatatattttaagcacacacaaccatggcaagtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atataggggaaagggctgtgaaatgatatattttaagcacacacaaccatggcaagtgta 380

                                                                       
Query: 181 aacttaagtcagttgtgcttccttgctctatgcctacataaggttgggaaggctaagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttaagtcagttgtgcttccttgctctatgcctacataaggttgggaaggctaagaat 440

                                                             
Query: 241 aagctatggataaagaagggtctgatctggtcttagtgattaactattta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctatggataaagaagggtctgatctggtcttagtgattaactattta 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)