BAC Information

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BAC

Clone NameMSMg01-278H23
Chromosome15 (Build37)
Map Location 38,766,726 - 38,766,961
singlet/doubletsinglet
Overlap geneBaalc
Upstream geneLOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1
Downstream geneTOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys, Lrp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278H23.T7 (MSMg01no278_h23.b1)MSMg01-278H23.TJ (MSMg01no278_h23.g1)
ACCAG416107AG416108
length744744
length of high quality
(start - end)
239 (128 - 366)239 (126 - 364)
definitionCHROMAT_FILE: MSMg01no278_h23.b1 PHD_FILE: MSMg01no278_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:50 2005CHROMAT_FILE: MSMg01no278_h23.g1 PHD_FILE: MSMg01no278_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATTTATCTCAATAATTTTAGAAAGTTTTAAGAGACTTTTGTT
GTTTTGCCAGAAAGATTTTTTCCACGTTAGAATCAAGAAAAAAATGTGCC
CATTCCCCATAGAAAATAGTAAGTAAAGGCTGTATAATTAGGAATACAAT
GAGCTTTCACAATTACACTAAAAAGAGAAATAGGCTTGGGACAAACTTGG
GATCAAGGAAAAAATTCTAGGTCAGATCCAAGGATTAAGCCACAGGTGTG
CCCTATGATAAGAGGAGGCCATGTGTTACTGTTGCTTTGAACTTATAATG
AAGTTATAGATTGATTTTCTGCTTCGAACTTAATATCAACATCCTTCTGC
AACTCCCTCTTTGTGTAACATTTTATCCATGAAGTAATTTTCTAAAGAAC
TTTTGCCTAAGAAGATATAAGGCCAGAGAGAAGGAATAAAGTGTGGTATC
TGGGACTCTGCCCCATCCATCCACCAAATGTATGTGTGTGGTTTGAGGGG
CTCTGCCCTATCCACCAAAAGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATACCCCCCCCCTCTCTTTTAT
ATTTTCTTCATTCCCCCTTTTTTTTCCCCCTCTCCCTTCCTCCTTTTTTT
TTTTTTCTCCCATTTTCCTCCCCCCTTTTATTTTTTTCCCCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCAATCATTAAGTTGCTTTCA
GTGGCTTTGATCAGCATTCCAGCTTCAAATTTGTCTCCAAAGTTCATTAC
CCGAGGAGACTTGTAGAGTCAATCTTTCAGAATCTCAGGTTTCTTAAACA
TATAGTGGAAATAAAATAATATCCAAAGGAACAGACAGATGGGCCTCCTC
TTATAGACTGCGATACAAAGAACAATGGGAAGGAGGGACAAACACGATAG
CTGGGCCCACAACACAATGACCTCATTAAGTGGAATGCTAATAGAGCCCA
AAGGCTAGCTGTTGTATGTAGACCCCCCGCCCTTGTATTGTCTACTTTGT
GCATCAGCTGACTTTCNGGAGACCCAGTCATCATTGACAGAGTGCGAGGC
AGTTTGGGGTCCACAGAACCATGTTCACGAGGTTGAGTGTTCTAGAGAAG
GTCCAGATGTCTGTCTCCTAATCCTTCTCTCCATATTTGAGACACAGAAT
GTGTTATAGTGGAGAGATGGCAGTTACCTGGAAACAGCTTGATCTACATG
CTTGTTTTCCTTGTGCCACATTCTGCCCTCCTCACCCATCATTTCAAAGT
TGTGTTTTGCACTTAAAAGGGTGCTAGCTCTTAGGCCCTCTAGGTTTTGG
AATCCTCCCAACAGCATCATGACCATTTTATAGGCAAGGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_h23.g1 MSMg01no278_h23.g1 CHROMAT_FILE:
MSMg01no278_h23.g1 PHD_FILE: MSMg01no278_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:50 2005
         (239 letters)



>mm_chr15_38766526_38767164
          Length = 639

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatttgtctccaaagttcattacccgaggagacttgtagagtcaatctttcagaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatttgtctccaaagttcattacccgaggagacttgtagagtcaatctttcagaatct 260

                                                                       
Query: 61  caggtttcttaaacatatagtggaaataaaataatatccaaaggaacagacagatgggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtttcttaaacatatagtggaaataaaataatatccaaaggaacagacagatgggcc 320

                                                                       
Query: 121 tcctcttatagactgcgatacaaagaacaatgggaaggagggacaaacacgatagctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tcctcttatagactgcgatacaaagaacaatgggaaggagggacaaacatgatagctggg 380

                                                                   
Query: 181 cccacaacacaatgacctcattaagtggaatgctaatagagcccaaaggctagctg 236
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 cccacaacacaatgacctcattaagtggaatgctaatggagcccaaaggctagctg 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)