Query= MSMg01no278_l02.b1 MSMg01no278_l02.b1 CHROMAT_FILE:
MSMg01no278_l02.b1 PHD_FILE: MSMg01no278_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:05 2005
(310 letters)
>mm_chr15_52738855_52739564
Length = 710
Score = 547 bits (283), Expect = e-160
Identities = 301/307 (98%), Gaps = 1/307 (0%)
Strand = Plus / Minus
Query: 4 ggaattctaagcaaccttctaccccacacatataacttcacctgctctgggaacttaatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggaattctaagcaaccttctaccccacacatataacttcacctgctctgggaacttaatt 269
Query: 64 acacccgagactcatgaacctattcctggcctctgtgtgatcaatgcccaagtttttctt 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acacctgagactcatgaacctattcctggcctctgtgtgatcaatgcccaagtttttctt 209
Query: 124 tctaatttacttatttttatgtgtgggagtattttgcctgaatgtatgtcaacttaccac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tctaatttacttatttttatgtgtgggagtattttgcctgaatgtatgtcaacttaccac 149
Query: 184 atgaatgcagggcccacgaatgccagaagagggcatcagatctcccaggactggagttac 243
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 atgaatgcagtgcccacggatgccagaagagggcatcagatctcccaggactggagttac 89
Query: 244 aggttagaagcctctatgtgggtactgatatattgaactcaaattctttggaataacagc 303
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 88 aggttagaagcctctatgtgggtactgaga-actgaactcaaattctttggaataacagc 30
Query: 304 ctgtgct 310
|||||||
Sbjct: 29 ctgtgct 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_l02.g1 MSMg01no278_l02.g1 CHROMAT_FILE:
MSMg01no278_l02.g1 PHD_FILE: MSMg01no278_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:06 2005
(284 letters)
>mm_chr15_52617686_52618369
Length = 684
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%)
Strand = Plus / Plus
Query: 1 aatggatttgcttcttagctggtggcatgtctgggtggaaactttcacagataaggcctg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aatggatttgcttcttagctggtggcatgtctgggtggaaactttcagagataaggcctg 260
Query: 61 tataggggaagtaagtcatggagagtgtgggctcacgtaaatctgttgttttcagccccc 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tataggggaagtaagtcatggagagtgtgggctcatgtaaatctgttgttttcagccccc 320
Query: 121 tttttggactccctttccagctgtcttgagataagcaactctggtcttgatgactcgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttggactccctttccagctgtcttgagataagcaactctggtcttgatgactcgttc 380
Query: 181 cttgccatgatttactgccctgcctcactccagacctaggaagagtaaaactaggtgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgccatgatttactgccctgcctcactccagacctaggaagagtaaaactaggtgatc 440
Query: 241 atcatcttaagcctgtgaaatcatgagccaaaaacaaacaaa 282
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagcttaagcctgtgaaatcatgagccaaaaacaaacaaa 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
