BAC Information

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BAC

Clone NameMSMg01-279F20
Chromosome15 (Build37)
Map Location 10,958,539 - 10,958,786
singlet/doubletsinglet
Overlap geneSlc45a2
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr
Downstream geneRxfp3, Adamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279F20.T7 (MSMg01no279_f20.b1)MSMg01-279F20.TJ (MSMg01no279_f20.g1)
ACCAG416748AG416749
length761772
length of high quality
(start - end)
295 (387 - 681)247 (78 - 324)
definitionCHROMAT_FILE: MSMg01no279_f20.b1 PHD_FILE: MSMg01no279_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:56 2005CHROMAT_FILE: MSMg01no279_f20.g1 PHD_FILE: MSMg01no279_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACTACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAATATTTTTTTTCACCCCCCACCCCACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGANACTTCAG
GAGAATGAATACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGAAC
AAAATACCATG
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTCAGAGCATCGAGACCGT
GAGTTTACAATGCTTATGAAGTGCTCCCCCTTACAGCAAAGTTTTAGCCT
TCCTCGATACAGCAATTTTGACCATGGACGCTAAAGCTGATCTTCACTTA
TATAAGGGAACCAGAGCAAAGCTCCATTAGGTGCCTCACTGAAGTCACAC
AAGTCATATGTGGCAAAGCTGGGCTTTCAATCCAGGGCTTTGGCTCTACT
GCTTCCCGTGGAGGGCAAGCATATTTATGCTTTTCTATGTGCTCAGGGCT
CAATGAATGTCATGTTTANTTTATTCCAAAAACAANACCCCCCNTCTCTC
CTTAGGTTTTCTGCAGCCTTGGNTAAGTGAACATCTGAATAACACTAGAG
GTGGGGGAGGCATGCATAAAGGAAATTTGTCCATGTGCCTTCAGATGTGA
AAGATAAAGCTATGGGTTTCCACTCTCATCCTAGAGTCTGGTAAAGTTAC
TCCTGGTGGTTTTCTAACTTGACCATATCTTTTCCTGGTTGGTAATTGTA
GAAAGCAAGTGAGCGGTCTGGCTCTCTCATTGTGGTTATACAGGAGTTGA
AATATTTGCTTTTGTTTTCTTTTTGTTTTACAGAAGGAATTGAGATATGT
TATAGCACTTTTCGTCTATGATCTCATGAAATAAATTTATCTATTCTTAT
TAAGCCGACCAACTAAAATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_f20.g1 MSMg01no279_f20.g1 CHROMAT_FILE:
MSMg01no279_f20.g1 PHD_FILE: MSMg01no279_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:56 2005
         (247 letters)



>mm_chr15_10958339_10958985
          Length = 647

 Score =  406 bits (210), Expect = e-118
 Identities = 238/248 (95%), Gaps = 2/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattctcagagcatcgagaccgtgagtttacaatgcttatgaagtgctcccccttacagc 60
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||
Sbjct: 201 cattctcagagcatcgagaccgtgagtttacaatgcttgtgaagtgcttccccttaccgc 260

                                                                       
Query: 61  aaagttttagccttcctcgatacagcaattttgaccatggacgctaaagctgatcttca- 119
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 261 aaagtcttagccttcctcgatacagcaattttgaccatggacgctacagctgatcttcac 320

                                                                       
Query: 120 -cttatataagggaaccagagcaaagctccattaggtgcctcactgaagtcacacaagtc 178
            |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tcttacatgagggaaccagagcaaagctccattaggtgcctcactgaagccacacaagtc 380

                                                                       
Query: 179 atatgtggcaaagctgggctttcaatccagggctttggctctactgcttcccgtggaggg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgtggcaaagctgggctttcaatccagggctttggctctactgcttcccgtggaggg 440

                   
Query: 239 caagcata 246
           ||||||||
Sbjct: 441 caagcata 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)