BAC Information

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BAC

Clone NameMSMg01-279H15
Chromosome15 (Build37)
Map Location 5,187,004 - 5,187,297
singlet/doubletsinglet
Overlap genePtger4
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33
Downstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279H15.T7 (MSMg01no279_h15.b1)MSMg01-279H15.TJ (MSMg01no279_h15.g1)
ACCAG416832AG416833
length771763
length of high quality
(start - end)
625 (47 - 671)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no279_h15.b1 PHD_FILE: MSMg01no279_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:04 2005CHROMAT_FILE: MSMg01no279_h15.g1 PHD_FILE: MSMg01no279_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGAACATCCCCGGCTATACAGAGAAACCTTGTCTCAAAAAACA
ATACAAAAAAAAAAAAAGAAAAGAAAAGAAAAAGAAAATATCATCTCAGT
ACTCATTGCAATTTTGCCCACTGGAGTAAAACCCTCCCTACTTTCAATTG
CAAACTTTATATTTTTCCTCTCAAAAATAAAGGTTGAAAGAATAACTGTA
CAACAAGAAAAATTAACTATGATAGTGCAAAGGTGTGAGAGACAAAAGAC
AGAAGAAAAGAACAGGAACTGCTCAGTTGTGAACCTATGATACCTAATGT
AATTGAGGATCAAGATAGACAGCCACCTGATAATGGTGGGAGAAGCCATG
CTCCCTGGTGTGGAGCTGGACATGGAACACAAGTGGCTGAATGCCTAGTT
TATGTGTGAATTCATAAAGAACTGTAAGTTGATAGAAAGGGGGAATAAGA
TTAGGCAAAAGACACTGGATTGTAGAAAAAACTGCTAAATTAGATCAACC
TGTGTATTTAAAAGTTGTTTTAATGTCAAAAGTCAGAGACTTTCATAAGT
CTTACACAATGTAAGAAGTTTTGCTTATGAAAGACTAGGGGTTCCATCAA
AATTGATAAAGATATGATCTAAGTAAGAGAAGCTTCCACCCAAAGGCACA
ACACAAGGAAAGAAAAGATGATAAAAGGGAGCAATGTAAATGACACAGAA
AGTACACTCACACACACCCAC
ACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTTTGTTTTTAAATTAAGTCAA
TGTTGTAAAAAAAATGAATGATGTATCGTTTCATTTTATCTTCAGCCATA
ATTAAATTTGACAGCTATAAAAGGGAATGAAAACAAGGCATACACACACA
CACACATATGTGTATATATGTATGTATATATATACACATATATGTATATG
TATATATATGTTGTAATGTCTTTCAGTAAATGAGAGCTCATAGGGGTAGC
ATATGGATGGGTATAGAGTATAGCATTCTGGGCTAGGATACGATTCAGTG
GCCTAGCATGCACGAACCCTGTAGCTTACCTCCCAACAGTGCAGAATAAA
TTCAATAAATAATTCCAAATTCATATAAAAATTTCTCAAAAGCCCAGTTG
TGGAAGCACGTGTTGCTGATCAAACAGAACCTTTGAGTCAGAGGGGGCGG
GAGGAAACTTCTAAAAACCTTGCTGAATACAAATGAAGCTGCTTCCTTCC
ACTTCAGACCACGAGCGGCTGCAGGCCTTGAGACTGTCACTTGTGCCTCA
TATTGGCAGCGATTCAACAGTTCCGAACATCTTAAGACTGATCAGACAGT
AAGCCCAGGAGCACTGAAATAGCACTTGGAGGGGCTCCAATAAAGTGAGA
GGTATGGCTTCAGGAAAGTTGATGGGAAGGTGTATGGTAATGTGGTAGAA
AGGCCTGACTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_h15.g1 MSMg01no279_h15.g1 CHROMAT_FILE:
MSMg01no279_h15.g1 PHD_FILE: MSMg01no279_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:04 2005
         (292 letters)



>mm_chr15_5186806_5187497
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 290/294 (98%), Gaps = 2/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattttgtttttaaattaagtcaatgttgtaaaaaaaatgaatgatgtatcgtttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 199 acattttgtttttaaattaagtcaatgttgtaaaaaaaatgaatgatgtattgtttcatt 258

                                                                       
Query: 61  ttatcttcagccataattaaatttgacagctataaaagggaatgaaaacaaggcatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttatcttcagccataattaaatttgacagctataaaagggaatgaaaacaaggcatacac 318

                                                                       
Query: 121 acacacacaca--tatgtgtatatatgtatgtatatatatacacatatatgtatatgtat 178
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acacacacacacatatgtgtatatatgtatgtatatatatacacatatatgtatatgtat 378

                                                                       
Query: 179 atatatgttgtaatgtctttcagtaaatgagagctcataggggtagcatatggatgggta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atatatgttgtaatgtctttcagtaaatgagagctcataggggtagcatatggatgggta 438

                                                                 
Query: 239 tagagtatagcattctgggctaggatacgattcagtggcctagcatgcacgaac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 tagagtatagcattctgggctaggatacgattcagtggcctagcatgcatgaac 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)