BAC Information

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BAC

Clone NameMSMg01-279J16
Chromosome15 (Build37)
Map Location 42,224,701 - 42,225,022
singlet/doubletsinglet
Overlap geneLOC100039197
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268
Downstream geneAngpt1, Rspo2, LOC675960, Eif3s6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J16.T7 (MSMg01no279_j16.b1)MSMg01-279J16.TJ (MSMg01no279_j16.g1)
ACCAG416921AG416922
length737755
length of high quality
(start - end)
325 (36 - 360)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no279_j16.b1 PHD_FILE: MSMg01no279_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:14 2005CHROMAT_FILE: MSMg01no279_j16.g1 PHD_FILE: MSMg01no279_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTG
TCTATATAATTCTGAGATAAACATCTTCATATATATTATGTATTAAATCT
TCAGGTAACTTGTGACTTTTTTAATGTGACATCATTTATTAAAATTGTAA
AATGTTTTAATAATCCTTTCTCTTTCTTACAAGCATAATATTTTATTAGT
TCTTTGGGAAGCTCATGTTATGCATCCAGATCACACTCATTTCCCAGTCC
GTCTATGTCTGCAACCCTCTGAACTTGTGATTTCCCCTTCCAAAAAACCT
AAAATAAAAATAAAATTAATATTAAAATAAAAAAGCAAGCCCAATTTGTG
TTGTCTATACTCAGTGGCGCATAATGAAACACTCAGTGGCCTGTCCTGTA
AATGCTACTGGGTCATTTCCCTCCTGCATCCTGGAAAGGAGCCATCAATT
GTCAAGAGCTAAGGTCACCATTTTTATCACCCTTTTTCAGCATTCTCTTT
GATTATGGCTTCCTGTTTAGGATGCCACTTTTTTGGGAATAGGAGTAAGG
GTTATCACAGAAGCCTTCCATGTTCCTCTTTCTCTAACTATATATCTGCA
ATCATCAATGTCATTGTCACAGTTAATCCTGTCAACAAATTCACTGTTTT
TAGAGGCACCTGAAAACATACATGTAGGTATGTCTGACAGTGTTTCCAGA
TAGATTACCAGAAGGGAGAGAACTCAACCTGAATTAT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTTCATCCACCTGAGTTTTTCA
ATACAAAGTCAAAACCACACACTGGAGCAAAGTCAACCTCCTCACCAAAA
GCCGGGCAACACCTGACTATGAATATGCAGAAGAATGAAATTTCATTATT
ATCTCTCTCTCTGTACAAAAATCAGTAACAAATGCATCAAAGAGCTTAAT
GTTAGACTTAAAATTTGAATTTACTAGCAAGTAGTACACTTAAAGTTGTG
GGCAAAAGTGAGGATTTTCAGAAAAGGACACTGATCACCATGAAATGGGA
CCAGCATTCATCAAGTGTATCTTGGTGAAACCACCCAGCACCTGTTGTGC
AAATAAAACTACTGAGTAAAGAGATAACATGTCCAGTGAAGATTTTATAT
TTAATTATATGTATATATACATATATGTTTATATGCATGTATGTATATGT
GTGTGTGTGACAGACAATTAGTGTTTAGACTATACAAAGAGCTTTAAAAA
CCACAATCAAACAAGAAAAAAGCAAACAAACAAAAACAATTAATAGGTTC
AATGGAAGAGAACAGACTTATCTAAAGAAGGATCACATATGTATAATAAA
TATTTTTTTGAAGTGATTGAAAATCCTTAGCCTATAGCGAAATGCAAGTT
GAAATTATTTGGAGATTTCATCTAACTGAAGTCAGAGTGGCTATTTTTTA
TAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j16.b1 MSMg01no279_j16.b1 CHROMAT_FILE:
MSMg01no279_j16.b1 PHD_FILE: MSMg01no279_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:14 2005
         (325 letters)



>mm_chr15_42224686_42225410
          Length = 725

 Score =  600 bits (310), Expect = e-176
 Identities = 319/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagctgtctatataattctgagataaacatcttcatatatattatgtattaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggaattcagctgtctatataattctgagataaacatcttcatatatattatgtattaaat 278

                                                                       
Query: 64  cttcaggtaacttgtgacttttttaatgtgacatcatttattaaaattgtaaaatgtttt 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cttcaggtaacttgtgagttttttaatgtgacatcatttattaaaattgtaaaatgtttt 218

                                                                       
Query: 124 aataatcctttctctttcttacaagcataatattttattagttctttgggaagctcatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aataatcctttctctttcttacaagcataatattttattagttctttgggaagctcatgt 158

                                                                       
Query: 184 tatgcatccagatcacactcatttcccagtccgtctatgtctgcaaccctctgaacttgt 243
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 157 tatgcatccagatcacactcatttcccagtccgtctatgtttgcaaccctctgaacttgt 98

                                                                       
Query: 244 gatttccccttccaaaaaacctaaaataaaaataaaattaatattaaaataaaaaagcaa 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 97  gatttccccttccaaaaaacctaaaataaaaataaaattaacattaaaataaaaaagcaa 38

                                 
Query: 304 gcccaatttgtgttgtctatac 325
           ||||||||||||||||||||||
Sbjct: 37  gcccaatttgtgttgtctatac 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)