Query= MSMg01no280_m13.b1 MSMg01no280_m13.b1 CHROMAT_FILE:
MSMg01no280_m13.b1 PHD_FILE: MSMg01no280_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:42 2005
(710 letters)
>mm_chr15_42343001_42344111
Length = 1111
Score = 1288 bits (666), Expect = 0.0
Identities = 696/706 (98%), Gaps = 1/706 (0%)
Strand = Plus / Minus
Query: 5 gaattcattatcaacatacaagctagagaagcaacttctccaacagacaaatgaaattct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaattcattatcaacatacaagctagagaagcaacttctccaacagacaaatgaaattct 851
Query: 65 gaagattcacgaaaaaaacaggtaaggactattttattatgaaaatgcttttatgtatac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gaagattcacgaaaaaaacaggtaaggactattttattatgaaaatgcttttatgtatac 791
Query: 125 ctctcgaaatcctttatctcaccggcaactgaaagtttcttttgaggtaactgaaaaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctctcgaaatcctttatctcaccggcaactgaaagtttcttttgaggtaactgaaaaact 731
Query: 185 atatccacaagagaagagaaagatgcaggtacagccaatgtgtcaaccactgggcctgcg 244
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 730 atatccacaagagaagagaaagatgcaggtacagccaatgtgtcaaccattgggcctgtg 671
Query: 245 ttctgattccatctggagttgcttagccctcagtcttaacttctgccacgggccattttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttctgattccatctggagttgcttagccctcagtcttaacttctgccacgggccattttt 611
Query: 305 ctaatagcaccatatatacaaaaattgtttgccattttggctaaatagactgacatttct 364
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctaatagtaccatatatacaaaaattgtttgccattttggctaaatagactgacatttct 551
Query: 365 tcagcagcaccaactttgtaaccttagagagaagaatggacagctgctcttggattatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcagcagcaccaactttgtaaccttagagagaagaatggacagctgctcttggattatta 491
Query: 425 cccagccagtcatttactccactcttcggatcatggtaaaacacaattcaattcaattca 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctcagccagtcatttactccactcttcggatcatggtaaaacacaattcaattcaattca 431
Query: 485 gagagcttggattacaggaaagcagatttataattttcctaagaaaatacttgcctataa 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 430 gagagcttggattacaggaaagcagatttataattttcctcagaaaatacttgcctataa 371
Query: 545 aataactaataagag-tttttttttcatttaaagtcatttaaatttgacataaaatttct 603
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 370 aataactaataagagttttttttttcatttaaagtcatttaaatttgacataaattttct 311
Query: 604 tgattgattaatagatatcctcatatcaggcatctcaggtcagtggagcataacagattt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgattgattaatagatatcctcatatcaggcatctcaggtcagtggagcataacagattt 251
Query: 664 tgaaaggtggggcagcgaaactagctcactttgacgtcattagtac 709
||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 250 tgaaaggtgggacagtgaaactagctcactttgatgtcattagtac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1111
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1101
Effective search space: 770700
Effective search space used: 770700
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_m13.g1 MSMg01no280_m13.g1 CHROMAT_FILE:
MSMg01no280_m13.g1 PHD_FILE: MSMg01no280_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:42 2005
(677 letters)
>mm_chr15_42305463_42306537
Length = 1075
Score = 1245 bits (644), Expect = 0.0
Identities = 669/678 (98%), Gaps = 4/678 (0%)
Strand = Plus / Plus
Query: 1 tattaggcgtggcagacttctgctacatatgtgacacacaggagggcgggacaacatttc 60
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tattaggcgtgtcagacttctgctacatatgtgacacacaggagggcaggacaacatttc 260
Query: 61 tgatgtaaataaataaaagaagtgtgtaaaaatcatgatggaaaaaaaggagttctctta 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tgatgtaaataaataaaagaagtgtgtaaaaatcatgatggaaaaaaaagagttctctta 320
Query: 121 gggaaaagaaaaaaaatatatattcctttaaactcctaatgagaacacttttagtttaca 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaaag--aaaaaatatatattcctttaaactcctaatgagaacacttttagtttaca 378
Query: 181 caacgaaaa-gtctggaaaaccctattgtaatgaggtggctggctcttacattgaattcc 239
|||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 caac-aaaatgtctggaaaaccctattataatgaggtggctggctcttacattgaattcc 437
Query: 240 tcaagagagagtgtgtgtagacttattttaggatatccaaatgcccctccctaccatcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcaagagagagtgtgtgtagacttattttaggatatccaaatgcccctccctaccatcag 497
Query: 300 tttttctcatttcttgtatattcatatttttgtatgattctttgttttattttattttta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttttctcatttcttgtatattcatatttttgtatgattctttgttttattttattttta 557
Query: 360 agtcacacattacttggttcaaagaatgttgcccagaatgcatataaaaaaatgtcaggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtcacacattacttggttcaaagaatgttgcccagaatgcatataaaaaaatgtcaggt 617
Query: 420 gaaatcaaagagcatttgtgagtctttcccacatcttgtgccttctaccccatctttctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaaatcaaagagcatttgtgagtctttcccacatcttgtgccttctaccccatctttctc 677
Query: 480 actcccacctatagagcaaatccgaaggcttctttcaagaagaaaattatctcaagaaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 actcccacctatagagcaaatccgaaggcttctttcaagaagaaaattatctcaagaaaa 737
Query: 540 gagaaaaatagcaaaacagccatacccagtagtccttattgaaatcaggatcaagagaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gagaaaaatagcaaaacagccatacccagtagtccttattgaaatcaggatcaagagaca 797
Query: 600 ggagtataagagatttagcttttgactggaccaagactttagaccggacatgaggccttg 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 798 ggagtataagagatttagcttttgactggaccaggactttagaccggacatgaggccttg 857
Query: 660 tatagtatgtggcacact 677
||||||||||||||||||
Sbjct: 858 tatagtatgtggcacact 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1075
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1065
Effective search space: 710355
Effective search space used: 710355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
