BAC Information

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BAC

Clone NameMSMg01-288B24
Chromosome15 (Build37)
Map Location 85,049,648 - 85,229,651
singlet/doubletdoublet
Overlap geneFbln1, Atxn10
Upstream geneParvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2
Downstream geneEG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288B24.T7 (MSMg01no288_b24.b1)MSMg01-288B24.TJ (MSMg01no288_b24.g1)
ACCAG418036AG418037
length736734
length of high quality
(start - end)
321 (51 - 371)292 (79 - 370)
definitionCHROMAT_FILE: MSMg01no288_b24.b1 PHD_FILE: MSMg01no288_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:08 2005CHROMAT_FILE: MSMg01no288_b24.g1 PHD_FILE: MSMg01no288_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,049,648 - 85,049,965)(85,229,360 - 85,229,651)
sequence
NNAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGCACACAGATCCGGCAGAGCCTCCCCTCTCTCAGGTGAC
AGCAGGCATCCCTTCCATCCTCTAACAAGTGCCAAAACCACTGTTTAGAA
CTTCATCAACCTGCTCCACCCTCTCAGAGACTGCAGAGGTTAAAATGAGC
TCTGTTTTAATACAAATGGGCCAGAGGGCTGAAGTGGCCATGCCAGGGTC
ACAAAGGGACAGAAGGTTCCAACACTAGAGCCAGAGTTTTAATGGCTCCA
AAGCTGTGCCCTTCTCCCCAGTCTTGCTTTTGGGTTTTTTGTCTGTGTGT
TTGTTTGTTTTCCTGGAGAGCGTTTTGCTATGTATCCCAGAACAGTCTTG
AACCCAGACTTGCCAGAAAACTCCCCCGCCCTNCATTCTCCTAGNCTCAT
CATTTCCAATCCTTGCTTTCCAGGAAGGCTTGAACTAAGTATATGGGACC
AGGGAAGACTCAGTGTCAGATTCTGCTTGGAAGAGTGTGTCAGATAGTGG
AACATCAGACAGAGAGATGAGCCCAGAGTGAAGGGTTCTAAGATGGGAGC
CCAGGGCCCTAAGACTGCCGGGAGGCGACAGACAGTGTGAGGGAGAGGCT
GGGTCTGGAGAAGAGCTTAAGGAGTCTAATCACATTGGTGATGTTGTATG
AGTTTGTGTGTGTGTCAGATGTGTTTTGGGGGCTTG
NTTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCAGAGGACTTATACTGTG
GAAGGACAGAACCTCCTTACATGCACAGCCACACACATGCCCTCAAATAC
ATACACACTGACTAAGCAAACAAATAAATCTCAAACATAAAAAGCTTGTA
AGTTATCTCAAAATTCAGAATTTAAAGGAATTTTAGTTTTCAGGTGTAAA
GTTGTTTCTTTTATCTAGTCTTTGTCTAACAAATGATTCCTGGAGCACAC
TCCATATTGTTGTAGTGAATATACAACAACTTTTTAAAGATTTACTTTAT
TTTTAATTCTCTGTGTGTGAGTGAATGAGCTGACGACGCCAGAGATCTCA
AATCCCCCTAGAGCCTGGAAGCCCCCCCGGTAAAAAGATGAGCCACCTAA
CAGTGTGCGGGAAAGAATTGGGTCCTCTACAAGCATGCAATCCTAACTGT
CAAGCCATCTCTGTCCAGCCCTACAACAAATAGCTTTTACGATAAACTGT
TACTGGGCAACTGATGCCGCTCAGAGGTAGAGTCTGCCTACCACCCACGA
GAGCCTATGTCTGATCGAGAGCGACATTACATACATATGGAGAGGACACA
TTTAAAGGAACCATCATGGGGAAGAAGGGGGGTGGGATCAGCAGGAGGAG
TGCAGGCTGGAAGAGGACAGTGCCGAAAGGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_b24.b1 MSMg01no288_b24.b1 CHROMAT_FILE:
MSMg01no288_b24.b1 PHD_FILE: MSMg01no288_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:08 2005
         (321 letters)



>mm_chr15_85049445_85050165
          Length = 721

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcacacagatccggcagagcctcccctctctcaggtgacagcaggcatccct 63
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcacacagaactggcagagcctcccctctctcaggtgacagcaggcatccct 263

                                                                       
Query: 64  tccatcctctaacaagtgccaaaaccactgtttagaacttcatcaacctgctccaccctc 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccatcctctaacaagtggcaaaaccactgtttagaacttcatcaacctgctccaccctc 323

                                                                       
Query: 124 tcagagactgcagaggttaaaatgagctctgttttaatacaaatgggccagagggctgaa 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 tcagagactgcagaggttaaaatgagctctgtgttaatacaaatgggccagagggctgaa 383

                                                                       
Query: 184 gtggccatgccagggtcacaaagggacagaaggttccaacactagagccagagttttaat 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 gtggccatgccagggtcacaaagggaccgaaggttccaacactagagccagagttttaat 443

                                                                       
Query: 244 ggctccaaagctgtgcccttctccccagtcttgcttttgggttttttgtctgtgtgtttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggctccaaagctgtgcccttctccccagtcttgcttttgggttttttgtctgtgtgtttg 503

                             
Query: 304 tttgttttcctggagagc 321
           ||||||||||||||||||
Sbjct: 504 tttgttttcctggagagc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no288_b24.g1 MSMg01no288_b24.g1 CHROMAT_FILE:
MSMg01no288_b24.g1 PHD_FILE: MSMg01no288_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:08 2005
         (292 letters)



>mm_chr15_85229160_85229851
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccagaggacttatactgtggaaggacagaacctccttacatgcacagccacacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 492 aatccagaggacttatactgtggaaggacagaacctccttacatgcacagtgacacacat 433

                                                                       
Query: 61  gccctcaaatacatacacactgactaagcaaacaaataaatctcaaacataaaaagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gccctcaaatacatacacactgactaagcaaacaaataaatctcaaacataaaaagcttg 373

                                                                       
Query: 121 taagttatctcaaaattcagaatttaaaggaattttagttttcaggtgtaaagttgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taagttatctcaaaattcagaatttaaaggaattttagttttcaggtgtaaagttgtttc 313

                                                                       
Query: 181 ttttatctagtctttgtctaacaaatgattcctggagcacactccatattgttgtagtga 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttttatctagtctttgtttaacaaatgattcctggagcacactccatattgttgtagtga 253

                                                               
Query: 241 atatacaacaactttttaaagatttactttatttttaattctctgtgtgtga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atatacaacaactttttaaagatttactttatttttaattctctgtgtgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)