BAC Information

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BAC

Clone NameMSMg01-288E08
Chromosome15 (Build37)
Map Location 67,774,992 - 67,775,284
singlet/doubletsinglet
Overlap genenone
Upstream geneNdrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288E08.T7 (MSMg01no288_e08.b1)MSMg01-288E08.TJ (MSMg01no288_e08.g1)
ACCAG418141AG418142
length821743
length of high quality
(start - end)
57 (45 - 101)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no288_e08.b1 PHD_FILE: MSMg01no288_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:19 2005CHROMAT_FILE: MSMg01no288_e08.g1 PHD_FILE: MSMg01no288_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TAACCTGACAGACCCTTCTCTCACTGCCCTCTTCTGCTAGAGTCATTCTC
AAGGAGACCTGCTCTTACTTCTGTATCTTCTTTCTGAGTGTTCCAATGCA
TTTAATGAGTTTCTTGCCCAACTGTGGGTGGCAGCTAATCTACTGGAGCA
AGGAAAACTTATGAACGGNGAAGCTATTCACAAAAAGAGAGAGAGATACC
CTCCTCCAACAACCACTAATTTTTTTTATTTACTCCCAGAGACCATAGGA
NCAGAATATTTTTGATGACTTCCCAGGACAAAACCCCCTAGGAAGTAATT
ATGTAGTTTGTGTGGTTGCCCCCCCCCTTTATCCNNAATNNNAAAAAGCT
CGTGGGGGGGGGGGGGACCCTCCTCAAATTAGCCTCCCCGTTTCCCTATA
ACTTCCTCAATACCCACTCTAAATTACTCCCTTCTTTTTCTATCCCCCCC
GAAAACTCCCCTACTTAATAACCCCCCCCTACACCCCCCTTTTTTTTTTT
TTCTCCCCCCCTTCTTTATACCCTCCTCTTTTCTTCCCCCCCATAATACA
TTCTTATTACACTTATAATCCCAGCTATCTACCACCACCTTATTACTTCC
TTCCCTCTTTCCACTATCCATCATTCTACATTCTCTCTTATTTTACTACT
ATTTACTATTTTTCTCCAACTTCCTTCCTGCCATTTTTACTACATATTTT
CACTTTCCTCGTCTCTCCCCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAAACATCAAGGCAGTGCTGTGGG
AAACACCAGGCAGAGAGATGTGTACGTAGTTGGGGAAAGACCACTTGTGG
CTGTAGGATGGCTTTATTGGAATAAGTCCTAGACCTGAGGGGTTCCTTAA
CTCTGAGTGCATAGTTTGGAATTGTTGACTTAAATTGAACTGAACTGATG
GACAGCCAGTTTATACAGGAGAATCAGACAATCAGTTTTTAATGTTGAAA
AATTACATGTATTTGACACCAAGAAGGAAAACAAACAGCAGGAGCCAATG
CAGTTTTGTTATCATCTCAGCTGGACACCTGCGGATAGAGTAGGAACTAA
ATCAGAAGCCCAAATGCCCCCCCAGGCATGCCAGACTGCATTTGGGGAGT
AATGGGTACCAAAAGAAAGAATATTCACTTATAGGAAGGGAGTGTTTGCC
TCTGAGGAGGAGGTGGTGTGGTTGCCATCCAGAATTCAGGGAGTCATGCT
TTATCCCCAGCCCCCAGAAGACCCAAGTTTGCATAGGATTTCAGTTCTTT
TTCAGCTCCGCCATGAGAGGTATGCATAAATTTGCATTTTTAATTAGCTC
CCCTATAGCTTTACCCTCCTAAAGTATAAAGGGTCTTCATAGCTATGCAT
ACTTCCAAGAAATACAGGTTATGTGTTGACCAAACCCTGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_e08.g1 MSMg01no288_e08.g1 CHROMAT_FILE:
MSMg01no288_e08.g1 PHD_FILE: MSMg01no288_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:19 2005
         (293 letters)



>mm_chr15_67774792_67775484
          Length = 693

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaacatcaaggcagtgctgtgggaaacaccaggcagagagatgtgtacgtagttgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 493 tcaaacatcaaggcagtgctgtgggaaacaccaggcagagagatgtgtaggtagttggag 434

                                                                       
Query: 61  aaagaccacttgtggctgtaggatggctttattggaataagtcctagacctgaggggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaagaccacttgtggctgtaggatggctttattggaataagtcctagacctgaggggttc 374

                                                                       
Query: 121 cttaactctgagtgcatagtttggaattgttgacttaaattgaactgaactgatggacag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 373 cttaactctgagtgcatagtttggaattgttgacttaaattgaactgaactgatagacag 314

                                                                       
Query: 181 ccagtttatacaggagaatcagacaatcagtttttaatgttgaaaaattacatgtatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccagtttatacaggagaatcagacaatcagtttttaatgttgaaaaattacatgtatttg 254

                                                                
Query: 241 acaccaagaaggaaaacaaacagcaggagccaatgcagttttgttatcatctc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acaccaagaaggaaaacaaacagcaggagccaatgcagttttgttatcatctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)