BAC Information

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BAC

Clone NameMSMg01-288G08
Chromosome15 (Build37)
Map Location 5,898,127 - 5,898,439
singlet/doubletsinglet
Overlap geneLOC100039358
Upstream gene4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319
Downstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288G08.T7 (MSMg01no288_g08.b1)MSMg01-288G08.TJ (MSMg01no288_g08.g1)
ACCAG418234AG418235
length734734
length of high quality
(start - end)
319 (47 - 365)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no288_g08.b1 PHD_FILE: MSMg01no288_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:28 2005CHROMAT_FILE: MSMg01no288_g08.g1 PHD_FILE: MSMg01no288_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGACATGTGTTCCATCTGCCTGTTTACATTTACTTCTCAAAGTC
TCAATAGATCACTGTATGTTCTGTCCGGTTCTTCTTTTGTTGTTGTTCAT
GATGTTTTTAACCTGTCTTACTATCAAAATTATACTTGAACTGCAGTGGC
TTAGGAAACAGACCTCTTGATATCTTAATTTTGACCATTTTAATTTATTA
GAAATGTCTAATATAAATGGCTTTCTAACACATAACATGATGTCTGGCAT
ATCGGAAGAATTTAAGAAATGATTGTATGAAAGAATTGATGGGAGAATGA
ATAACATTTTCTATTTTTTTACCCTCCCCCCCATACGACCATTTTAGCAG
ATTTATAAAATTCTTGCCCCCCCATTGAATTATAAGAATGGCCACACCAA
TTGCAGACTTTCAAACTCTAGAGCAGTGGCTCTCAACCTGTGGGTTGCAA
CCACTTTGTGGGCCATATCCTGTATATCAAACATTTACAGTACAATTCGT
AACAGTAGAAAATTACAGCTATGGAGTAGCAACAAAAATAACTATGGTTG
TGAGTCAGCATAACACAAAGATTTGTTTTATAGCATCACAGCACCAGGAA
AGTTGAAAAGCACTGCTCTAGAACTAAGAAAAACCCAATTCCTGCTTAAT
GCGTCATGCAGTCTATGTTACTTCTTTTAGTGAG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCTCAAAAGCCATCAGTAGCC
AGTAGTTAATAGATAACAGGCACCGCCCCATAAGTTTTTACTGTATCCAT
GACTGATTATGCTAGCCCTAGTCTTGTGTAGATCCATTGCATATGGCTAC
AGATGATAAGAGGTCATGGTAGCATTGGTTATGTCTTTCCCAGAATTCAA
CACTTTACAACGCTCTCTTCAATTTCTGAGTCTCACATTCTTTCTGTCCC
CTCTTCTTGACCACACTTGAACTTTACAGAGATTGTATAAATGCCCTCGT
GATTGTTGATTTTTCTTAAGTCCCTCACTCTGAACACCTTGAGCATCTAT
ACATCTCTGTACTCCCCCCCACTTGATCCAAAACAAGGCTTCTCTGGTAA
AAGACAAGAGTAGCCTTTGTCTATGGATATGAACATGAATATTAGGAGGC
AGCCTGTTGGCATGATAATTCAGCTAAACATCACTATTACTTTTTTTCCT
ATGGCATCTAACCTCCTCACCCATGGACTTTTGACTGGATTTATAGTATG
AAGTCATATTGTTTTATAGGAGGTATGAATTCATTCTTGTGGAATGAGCT
TCAAATCTAATTAGATTGTTGCCACTATAAGAGTCTATACATGAATTTTA
TCATGTAGCAATGTAGGATTTTTATCACAGGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_g08.b1 MSMg01no288_g08.b1 CHROMAT_FILE:
MSMg01no288_g08.b1 PHD_FILE: MSMg01no288_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:28 2005
         (319 letters)



>mm_chr15_5897923_5898641
          Length = 719

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgacatgtgttccatctgcctgtttacatttacttctcaaagtctcaatagatc 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctgacatgtgttccatctgcccgtttacatttacttctcaaagtctcaatagatc 458

                                                                       
Query: 65  actgtatgttctgtccggttcttcttttgttgttgttcatgatgtttttaacctgtctta 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 457 actgtatgttctgtccggttcttctattgttgttgttcatgatgtttttaacctgtctta 398

                                                                       
Query: 125 ctatcaaaattatacttgaactgcagtggcttaggaaacagacctcttgatatcttaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctatcaaaattatacttgaactgcagtggcttaggaaacagacctcttgatatcttaatt 338

                                                                       
Query: 185 ttgaccattttaatttattagaaatgtctaatataaatggctttctaacacataacatga 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttgatcattttaatttattagaaatgtctaatataaatggctttctaacacataacatga 278

                                                                       
Query: 245 tgtctggcatatcggaagaatttaagaaatgattgtatgaaagaattgatgggagaatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtctggcatatcggaagaatttaagaaatgattgtatgaaagaattgatgggagaatga 218

                        
Query: 305 ataacattttcta 317
           |||||||||||||
Sbjct: 217 ataacattttcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)