BAC Information

Click to search

BAC

Clone NameMSMg01-290A07
Chromosome15 (Build37)
Map Location 9,025,886 - 9,026,175
singlet/doubletsinglet
Overlap gene1110020G09Rik
Upstream geneWdr70, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l
Downstream geneSkp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290A07.T7 (MSMg01no290_a07.b1)MSMg01-290A07.TJ (MSMg01no290_a07.g1)
ACCAG419413AG419414
length744745
length of high quality
(start - end)
664 (45 - 708)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no290_a07.b1 PHD_FILE: MSMg01no290_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:27 2005CHROMAT_FILE: MSMg01no290_a07.g1 PHD_FILE: MSMg01no290_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTATGCCCTGAGCCCCATTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTCTTATATATATTGGATATTAGTCCCC
TATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGATGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTGTGAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTTCCCCTGTACCCATGTCTTCGAGGCTTTTCCCTAC
TTTCTCCTCTATAAGTTTCAGGGTCTCTGGTTTTATGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGC
ATTCTTCTACATGATAACCTCCTAGGCTTTTTGTTATTCCAGATGAATTT
GCAAATTGCCCTTTCTAATGAGTGAAGAATTGAGTTGGAATTTTGATGAG
GATTGCATTGAATCTGTAGATTGCTTTCAGCAGACAAGATAACCATTTTT
ACTACATTAATCCTGCCAATCCAAGAGCATTGGAGATCTTTCCATCTTCT
GAGATCTTCAATTTCTTTCCTCAGAGACTTGAAGTTCTTATGATAAAGAT
ATTTCACTTGCTTAGTTAGAGTCACACCTAACTATTTTATATTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAATTCCTACAACCTGCCTTGT
AGAAATAGTGATTCAAGTAGTAGAACTTAATTACTTAATGAAATTCTCTC
CAAAGCCATAGTGCATACTGATAACTATGGAAATAGAATATTGTGTGAGA
AAAAGTTTGTGAAACGTGAAATTGAACAGTTCTTTGAGTCCTTGCTGCAC
TGCTCTTCAAGGCCCTTATCAGAGTGAGGATGTCTAAAGAGCCGGAGAGC
CGGGCGCTAGGTGTACACTTGCAGGCAATTGCTAGACAGTCTGTATCAAC
ATTGCTTTTCTAAAACTGATTGCACCCGCGCATTCCTATAGCCCAGCTGC
TCCGGAGGCCCCAGCTGTCTTGTTAGAGCCTGAGCCATGGAGCTTGAGGC
GACAGTGCAACACTGCAAACCTATCCTCCTCCTGCCTCTCTCCACCCTCC
CTCTTCCCCTCCCCGTCCTGTCCCTGTCACAACATAGTGAAAACATCTCT
CTCTCTCTCTCTCTCTCTCTCTGTCTTTCTCTCTCTCTCTCTCTCACACA
CACACACACACATACACACATGTACATAAACCCTCACATAAAAGACAAAT
TTTTCTCTTAGGACACATACTTTTCTCCCCCTTTTCTCTCACGTAAAGAC
ACATGCTCACGTAGAGAATAATGTCCCTACTTGGTGGCGTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_a07.g1 MSMg01no290_a07.g1 CHROMAT_FILE:
MSMg01no290_a07.g1 PHD_FILE: MSMg01no290_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:27 2005
         (292 letters)



>mm_chr15_9025686_9026377
          Length = 692

 Score =  499 bits (258), Expect = e-146
 Identities = 282/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaattcctacaacctgccttgtagaaatagtgattcaagtagtagaacttaattactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 201 agtaattcctacaacctgccttgtagaaatagtgattcaagtagtagaaattaattaatt 260

                                                                       
Query: 61  aatgaaattctctccaaagccatagtgcatactgataactatggaaatagaatattgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaaattctctccaaagccatagtgcatactgataactatggaaatagaatattgtgt 320

                                                                       
Query: 121 gagaaaaagtttgtgaaacgtgaaattgaacagttctttgagtccttgctgcactgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaaagtttgtgaaacgtgaaattgaacagttctttgagtccttgctgcactgctct 380

                                                                       
Query: 181 tcaaggcccttatcagagtgaggatgtctaaagagccggagagccgggcgctaggtgtac 240
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 381 tcaaggcccttatcagagtgaggatgtctaaagagccggggagccaggcgctaggtgtac 440

                                                             
Query: 241 acttgcaggcaattgctagacagtctgtatcaacattgcttttctaaaac 290
           ||||||||||| |||||||  |||||||||||||||||| ||||||||||
Sbjct: 441 acttgcaggcagttgctaggtagtctgtatcaacattgcctttctaaaac 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)