BAC Information

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BAC

Clone NameMSMg01-290F05
Chromosome15 (Build37)
Map Location 57,419,039 - 57,419,327
singlet/doubletsinglet
Overlap genenone
Upstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
Downstream geneZhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290F05.T7 (MSMg01no290_f05.b1)MSMg01-290F05.TJ (MSMg01no290_f05.g1)
ACCAG419636AG419637
length730734
length of high quality
(start - end)
476 (46 - 521)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no290_f05.b1 PHD_FILE: MSMg01no290_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:50 2005CHROMAT_FILE: MSMg01no290_f05.g1 PHD_FILE: MSMg01no290_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTGTATAGCATTTACATTATAATAAATTTCTAAGAGTCAGCT
CACAAAGAAACTATCAAGTCTTTCTACAAAAATATATCTCCAGCAAGGAC
AACTATCCCTGTCCCTTCCTTACCTGCTGCAATAGTCTGGGAAGGGCCTT
GTACCTTCCCCCAAGTCCTGGGCAGCACAGTAGAGCTGACCTTGGACTTG
GGGGTTGCATGTGAGCCTTTCCTGAAGGCATAAGCCTGGGAGACCTGATG
GTAACTCTTGTCTTCTGTGCAGTGGTGAGGACAAGGGGGAGATTGTCCTC
TTTCCCTTCCCTTACCACCTATGGCAGGTGGGAAAGCTGGCCTTGGCATC
ATGAGAGGAAAACAACTGACCTGTTCCCTGGTCAGCGGCAATGCTCTGGA
GAGTAGGCTCTGCATTTTGCCTGGGTAACAGGGTAGAACAGGCCCTGGTT
TCAGGGGTTGCAGGTGAGGTGGCCAGAGAGGATGAGAGCACAGTCCCTCA
CCTGCTACAGCACTAGGGAGAGCAAGCCTTGTACCTCACTTGGGCAGCAC
AGTAGAGCAGTCCCTGATGGTGTAACCATGAGAATGTGAGAGTGGACTCT
GCCCCCTTGCTGGCTACAGCATTGGGTGAGCTAGTTGTGCCATGATATGA
AAGCTTGCCCTTGCCCTTGCCCGTTGCCTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGTGAACATTTGGTACCACGAGGA
TCCAAATCCTCTCTGCTTACTACCATATTTGGATTCCCAAGTTCTTCCTT
TATCGTTTAACTCATAAGATGTGGTTAAGTTAGGTCTACCCAGGCCAAAC
AACAACTGTTGTCATTGGTTGATCTTTGTAGTTTGGTACCATTAAATGGT
ACTAGTTATCTCCACACATTGTAGAGATACCTGGAAGCTGGAGAATAAGT
TATTCATTGTGCCCTTGGCAAAAATCCTCTACGGTAAATGTCACTTCTAT
TCATTTACTAGGTTTTTTTTATGACGCACCACCTTGGTTAAATTCATACC
ACTAGTCAGTAATGGAATGACGATTCCAAGCCAGATTTATCTGACTCCAA
GATTTCTTCAATATGCCATTCTCCCATCATAAAGCATCCTCAGAAGGAGC
TTTGAGACTGGTTCCTTACATTCCACCCTCATGGCTCCCTCCCTCCTCTC
TCCATTCCCCACCATAACTTAGCTGATAGTGGACACCAGGACCAAATGGC
AACCAAGTCATCAGCTTTGTTCCTGCTCATGCTGGACTCTATTCTCTGGC
AATATTCCATAGGGAGGTCTCTCTTCACTATTCAGTAGAATCACTGTCCT
GTGTTAAGGTGTCTGTCACAGGCAGTGTGAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_f05.g1 MSMg01no290_f05.g1 CHROMAT_FILE:
MSMg01no290_f05.g1 PHD_FILE: MSMg01no290_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:50 2005
         (290 letters)



>mm_chr15_57418839_57419528
          Length = 690

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgaacatttggtaccacgaggatccaaatcctctctgcttactaccatatttggat 60
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 489 tcagtgaacttttggtaccacgaggatccaaatcctctctgcttactaacatatttggat 430

                                                                       
Query: 61  tcccaagttcttcctttatcgtttaactcataagatgtggttaagttaggtctacccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcccaagttcttcctttatcgtttaactcataagatgtggttaagttaggtctacccagg 370

                                                                       
Query: 121 ccaaacaacaactgttgtcattggttgatctttgtagtttggtaccattaaatggtacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccaaacaacaactgttgtcattggttgatctttgtagtttggtaccattaaatggtacta 310

                                                                       
Query: 181 gttatctccacacattgtagagatacctggaagctggagaataagttattcattgtgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gttatctccacacattgtagagatacctggaagctggagaataagttattcattgtgccc 250

                                                            
Query: 241 ttggcaaaaatcctctacggtaaatgtcacttctattcatttactaggt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttggcaaaaatcctctacggtaaatgtcacttctattcatttactaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)