BAC Information

Click to search

BAC

Clone NameMSMg01-291F02
Chromosome15 (Build37)
Map Location 61,051,547 - 61,210,829
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291F02.T7 (MSMg01no291_f02.b1)MSMg01-291F02.TJ (MSMg01no291_f02.g1)
ACCAG420350AG420351
length737737
length of high quality
(start - end)
239 (127 - 365)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no291_f02.b1 PHD_FILE: MSMg01no291_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:04 2005CHROMAT_FILE: MSMg01no291_f02.g1 PHD_FILE: MSMg01no291_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,051,547 - 61,051,785)(61,210,540 - 61,210,829)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTCACCTTCATCTTTCAGATGTGTGAGTCTATCATGCACCCTT
GTTGAGATGTTCCTGTTTCATAAGCTCCAGGATTTGTTTCATCCTAGAGC
CCCTTAAAATAAGTAAACATATTTGATGTTATGATAGGTAGTTTGGATGG
TAATCAAGCATTGAGGGCTATGGATTGGCAGCTGACAGGTTAAAATCTCA
TTTTACGTTCAGGTCACCCACAGTAACCGCACAAGGCATATGTAATCACT
ATATATTTAGGAAGGAAAATTTGTCCTTTCCTTCAGATTCACTCAAGAGA
TTTTCCTGACATCTTATATCTTAGTGCCCCCTCCTTGTGTAGGGATTTAT
GAATATTCTGGTTAGTTTGACACAAGGCGACATTTCAAAAAAAATTACAG
AGTTTTCAGATGAACAATGTATTGTAGTCACTTAGGAATTAGTGACTATT
TTTAAGTTTTGCTTGATTTGGCACAGAAAGTATGCAATAAGGAAGGTATG
GGCCTGGATCATAGAAATGCCTTCATATCAAGAACTGTAAGTACCTATGC
TCATTTATTGGGCTAGGGTTACCTGATATGGTTGGCAGGAATTAAACCAG
GCCATTTGGAGGGGTCATAGCAAGACTAANGCTGTGATGATTTTAGTAAG
AGCAATCAAGCTTTTTATACCTTTATCAGAAATAGAA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATTAATCGAATGGTGCTGTGGGAA
AGTTTTGTTCTGGGTGATGATTCTGCTGAGTTTGATGATTTATGGTATGA
TAGGGATGATTCTGAACATGCAGTTAGAAAGTGAGCAGGAACATGAGAAC
ATGGGGCTTAGATTAGATTAAGGTGTATTCAGTGAAGAGGAGAAAAGCAT
GCTGAGAAGTGTCAGTGAGAAAACTGGAAGGAAGTATGGCTGGATGCCAG
TTACTCTAGAGGAGTAAGGCTTGGAAATTGAAATAAAACTGTGTGCGGTG
AACCACTCACCACGATTTTTTTTCTACCCCCCCACAGGGAATTAAGGAAT
CGGGGGTAGGTGCAGAGATCCGCAAGCCACTAACATATAGAATGTGCCAT
TTTTTATTTTGTTTTTTTTATTAGGTATTTATTTCATTTACATTTCCAAT
GTTATCCAAAAGGCCCCCCCGCCCCCCCACTCCCACTTCTTGGCCCTGGC
GTTCCCCTGTACTGAGGCAGATAAAGTTTGCATGACCAATGGGCCTCTCT
TTCCACTGATGGCCGACTAGGCAATCTTTTGATACATATGCAGCTAGAGT
CAAGAGCTCCGGGGTTTACTGGGTAGTTCATATTGTTGTTCCACCTATAG
GGTTGCAGATTCCTTTAGCTCCTTGGGTACTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_f02.b1 MSMg01no291_f02.b1 CHROMAT_FILE:
MSMg01no291_f02.b1 PHD_FILE: MSMg01no291_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:04 2005
         (239 letters)



>mm_chr15_61051347_61051985
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggatttgtttcatcctagagccccttaaaataagtaaacatatttgatgttatgata 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ccaggatttgtttcatcctagagccccttaaaataaggaaacatatttgatgttatgata 260

                                                                       
Query: 61  ggtagtttggatggtaatcaagcattgagggctatggattggcagctgacaggttaaaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ggtagtttggatggtaatcaagcattgagggctatggattggcagctgacaggtgaaaat 320

                                                                       
Query: 121 ctcattttacgttcaggtcacccacagtaaccgcacaaggcatatgtaatcactatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcattttacgttcaggtcacccacagtaaccgcacaaggcatatgtaatcactatatat 380

                                                                      
Query: 181 ttaggaaggaaaatttgtcctttccttcagattcactcaagagattttcctgacatctt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggaaggaaaatttgtcctttccttcagattcactcaagagattttcctgacatctt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no291_f02.g1 MSMg01no291_f02.g1 CHROMAT_FILE:
MSMg01no291_f02.g1 PHD_FILE: MSMg01no291_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:04 2005
         (290 letters)



>mm_chr15_61210340_61211029
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattaatcgaatggtgctgtgggaaagttttgttctgggtgatgattctgctgagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atattaatcgaatggtgctgtgggaaagttttgttctgggtgatgattctgctgagtttg 431

                                                                       
Query: 61  atgatttatggtatgatagggatgattctgaacatgcagttagaaagtgagcaggaacat 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atgatttttggtatgatagggatgattctgaacatgcagttagaaagtgagcaggaacat 371

                                                                       
Query: 121 gagaacatggggcttagattagattaaggtgtattcagtgaagaggagaaaagcatgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gagaacatggggcttagattagattaaggtgtattcagtgaagaggagaaaagcatgctg 311

                                                                       
Query: 181 agaagtgtcagtgagaaaactggaaggaagtatggctggatgccagttactctagaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agaagtgtcagtgagaaaactggaaggaagtatggctggatgccagttactctagaggag 251

                                                             
Query: 241 taaggcttggaaattgaaataaaactgtgtgcggtgaaccactcaccacg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taaggcttggaaattgaaataaaactgtgtgcggtgaaccactcaccacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)