BAC Information

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BAC

Clone NameMSMg01-291L14
Chromosome15 (Build37)
Map Location 49,146,451 - 49,324,789
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291L14.T7 (MSMg01no291_l14.b1)MSMg01-291L14.TJ (MSMg01no291_l14.g1)
ACCAG420642AG420643
length734738
length of high quality
(start - end)
320 (45 - 364)185 (131 - 315)
definitionCHROMAT_FILE: MSMg01no291_l14.b1 PHD_FILE: MSMg01no291_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:35 2005CHROMAT_FILE: MSMg01no291_l14.g1 PHD_FILE: MSMg01no291_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,146,451 - 49,146,765)(49,324,605 - 49,324,789)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTAGTCCTATTGCAACTTGATACTGTAAGAAAGGTTTATATCCA
TAGTATTCCTTTCCTCCTCTCACAAATGGAGAGGGACAAATGAGGAGGGA
AGGAGAAATGGAAGGGACCAGAACTAAAGGAGGAAAGAAATGTTGTGATC
AGGATGTAAATAAATAATTAATTTAAAAAGAAAACGCTTTCAAAGACAAG
CTATGGTCAACATAAAATTTATAATCAACTTCTACCTGAAACATTTAATT
TCCTGGAGAATCATGACAACGCTCTAGAGAAAAGACTTTTTCTCATAAAT
TATTATTAATATTTTATTTAATCCCCCCCCCCTTATTCCATTTCATGAAG
TTCTCTACATCACTACCCCCCTGAGCAAAAAAACTAAAAATTGCTAGATA
ATGACAATTTGTCTGCATCTAACTAGTCAAAATCAAAGCCTAATAATGGC
ATGTGTTGTTTTTCAGTTTTCTCCTGTGACAAAAAAAAGATGAATTAAAG
AAAAGCCACTTAAATGAAGAACCAAGGAGGTATGTTGCTGTTGTTGTTGT
GTGTGCGTGAATGTCTGCTAGCTTGTTTGGGTTGCGGTTTCAGCTTTAAA
TTTGAAGGTTTTTTTGTTTGTTTGCTTGCTTGTTTCTGAGTCTATGGTTA
AGTAAAAAAGAAAGCCTGTTGGAATATGTGGTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAATTCAGGCTCAATGAAAGACAAACCCTGT
CACAAAAAGTATGGAGATTTATACCGAAATATAACATGAATAATTGGCAA
CCCCATGAACACAGACTGCATCTCTTACCTGCATTCATACACAAGCATAC
ACCTTATACATGCATACACTCTATATAAACAGACACATAAGAGAACAACT
TATATTCATGTCTTATGATGCGCTTTTCTGAGCAGAGGATGGCTTTATCT
GACATCATTGGGAGGGAAAGCTTTATTTCTCACTGNAGGGGGCGCTAAAG
AGNCGACGCGTTTGNGTGNTATCCCCCCCCCCCCCCATCCTCATAGATGC
AAAAAGGAGGGGAGAGAGCCCCCGAAAAAAAAAAAAAAGAAAATGGATAA
CTGGGAAGGGGCATATCATCATTTGAAATGTAAACAAATAAAATAATGAA
TTAAAAAAACAGACCTAAAGTCACAAAAAAGGGACAAATGTCTAAGGAAA
AAAATCATCTGAAAATGAACATTTTTTTATTGAATTTTCTATTTGGTATG
GAAATGACACAATTAAATAGCGTTTGCATCAAGGGTCCAATCTTCTCTTT
CCTATTTGGGAAAATATTTCTCCTTTCCCAAGAAATATGTTGAATCCATT
CTGAGCAATTATGTTATACACGTAACCCTTCAAGGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_l14.b1 MSMg01no291_l14.b1 CHROMAT_FILE:
MSMg01no291_l14.b1 PHD_FILE: MSMg01no291_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:35 2005
         (320 letters)



>mm_chr15_49146247_49146966
          Length = 720

 Score =  540 bits (279), Expect = e-158
 Identities = 306/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctagtcctattgcaacttgatactgtaagaaaggtttatatccatagtattc 64
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaatccacctagtcctactgcaacttgatactgtaagaaaggtttatatccatagaattc 264

                                                                       
Query: 65  ctttcctcctctcacaaatggagagggacaaatgaggagggaaggagaaatggaagggac 124
           |||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttcctcctctgagaaatgaaaagggacaaatgaggagggaaggagaaatggaagggac 324

                                                                       
Query: 125 cagaactaaaggaggaaagaaatgttgtgatcaggatgtaaataaataattaatttaaaa 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaactaaaggaggaaagaaaagttgtgatcaggatgtaaataaataattaatttaaaa 384

                                                                       
Query: 185 agaaaacgctttcaaagacaagctatggtcaacataaaatttataatcaacttctacctg 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 agaaaacgctttcaaagacaagctatggtcaacatgaaatttataatcaacttctacctg 444

                                                                       
Query: 245 aaacatttaatttcctggagaatcatgacaacgctctagagaaaagactttttctcataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacatttaatttcctggagaatcatgacaacgctctagagaaaagactttttctcataa 504

                          
Query: 305 attattattaatatt 319
           |||||||||||||||
Sbjct: 505 attattattaatatt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no291_l14.g1 MSMg01no291_l14.g1 CHROMAT_FILE:
MSMg01no291_l14.g1 PHD_FILE: MSMg01no291_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:35 2005
         (185 letters)



>mm_chr15_49324440_49325024
          Length = 585

 Score =  350 bits (181), Expect = e-101
 Identities = 184/185 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataacatgaataattggcaaccccatgaacacagactgcatctcttacctgcattcatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ataacatgaataattggcaaccccatgaacacagactgcatctcttacctgcattcatac 291

                                                                       
Query: 61  acaagcatacaccttatacatgcatacactctatataaacagacacataagagaacaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acaagcatacaccttatacatgcatacactctatataaacagacacataagagaacaact 231

                                                                       
Query: 121 tatattcatgtcttatgatgcgcttttctgagcagaggatggctttatctgacatcattg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 230 tatattcatgtcttatgatgcgcttttctgagcagaggatggcttcatctgacatcattg 171

                
Query: 181 ggagg 185
           |||||
Sbjct: 170 ggagg 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)