BAC Information

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BAC

Clone NameMSMg01-292E02
Chromosome15 (Build37)
Map Location 22,652,091 - 22,652,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040351, EG545091
Downstream geneCdh18, LOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292E02.T7 (MSMg01no292_e02.b1)MSMg01-292E02.TJ (MSMg01no292_e02.g1)
ACCAG421024AG421025
length730722
length of high quality
(start - end)
315 (44 - 358)510 (76 - 585)
definitionCHROMAT_FILE: MSMg01no292_e02.b1 PHD_FILE: MSMg01no292_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:16 2005CHROMAT_FILE: MSMg01no292_e02.g1 PHD_FILE: MSMg01no292_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGA
ATTCAAGAAGATCGCGACCAAAGTGTGGACACTTTACCCTTTCTTAGAAA
TGGGAACAAAACACCCATAGACCGAGTTACAGAGACAAAATTTGGAGCTG
TGACGAAAGGATGGACCATCTAGTGACTGCCATATGCAGGGATCCATCCC
ATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGATTTCG
CTGAAAGGACCCAGTTATAGCTCTCTCTTGTGAGACTATGCTGGGGCCTA
GCAAACATAGAAGTGGATGTATTCAGTCAGCTATTGGATGGGTCACACGG
ACCCTATTTAGTGGTTACCCCCCCCCCCCCCAGGAGCTATAGGGAACTGC
AACCCTATAGGTGGAACAACAATATGAACATAACCAGTACCCAGGAGCTC
TTGTCCTTAGCTGCATATGTATCAAAAGATGGCCTAGTGGGCCATCACTG
CAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGG
AACGCCAGGGCCAAAAAGGGGGAGTGGGTGGTGTAGGGGATTCNCCTCTT
TCCCTCCCCCCTTTTTTCCTTTCTCTTTTTCCCCCCCTTTCTCCCTCCCC
TATCTCCCTTTTTTTTTTCTTTCCCTCCCTTTCTTCCCCTCCATCTCCAC
CCTCCCCACCTCTCTTCCCATCCTGTTCAN
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTATGGTAGAAAAGGGCCACAATT
CAGGAGTGAGATAAAGATCCTTTGGGAGAGGTGGTAGTGGAACAAAATTT
CATGAAGAAAACTAGGTGACTAAGAGAGAAAGCGGTTGATGTGGAGAAAG
GATCGGTGAGTCAAACAAAGAGTGTGGTTTAAGTTGGATAATATACACTA
AATATATTTGAATAGGCCATTTGGGAATGTAGTATTTTATTTGCTTCCTA
AATAAGCATAGATATTTTTCATATAAAAGAGCATAACTAGGTTTACTCCA
TGTAGCCTTTATCTAATTTCTAACTTGATTATTTCTCCTCTAATATATAC
TGTCTCGTTACTTACCTGACAAAGCCATACTAGGATTAAAATGTGATTGT
TAATATGATTGCATACACAATATTGTATGTGAAGAAACTTATGTGACAGA
AAATCTGAACTTTTAGTATTTTAAAAGAATAAATCTCTAGCTATTTAATA
AGTCATGAATGTTTTATAAGAATGTGCTAGGTAAATATTTAGAAACTCTC
TAACACTTAATAGGATTTATAAAATTTATTCAATATTATCTGTTGAGATT
TGATTTGGGCTCCTGGTTAACATATTTTACTGCCGTCTCTCCTAGTTCTC
TTCCGCTTGTCCGCCTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_e02.g1 MSMg01no292_e02.g1 CHROMAT_FILE:
MSMg01no292_e02.g1 PHD_FILE: MSMg01no292_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:16 2005
         (510 letters)



>mm_chr15_22651891_22652800
          Length = 910

 Score =  940 bits (486), Expect = 0.0
 Identities = 504/510 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatggtagaaaagggccacaattcaggagtgagataaagatcctttgggagaggtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 agtatggtagaaaagggccacaattcaggagtgagataaagatcctttgggagaggtggt 651

                                                                       
Query: 61  agtggaacaaaatttcatgaagaaaactaggtgactaagagagaaagcggttgatgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 650 agtggaacaaaatttcatgaagaaaactaggtgactaagagagaaagcggttgatgtaga 591

                                                                       
Query: 121 gaaaggatcggtgagtcaaacaaagagtgtggtttaagttggataatatacactaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaaaggatcggtgagtcaaacaaagagtgtggtttaagttggataatatacactaaatat 531

                                                                       
Query: 181 atttgaataggccatttgggaatgtagtattttatttgcttcctaaataagcatagatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atttgaataggccatttgggaatgtagtattttatttgcttcctaaataagcatagatat 471

                                                                       
Query: 241 ttttcatataaaagagcataactaggtttactccatgtagcctttatctaatttctaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttttcatataaaagagcataactaggtttactccatgtagcctttatctaatttctaact 411

                                                                       
Query: 301 tgattatttctcctctaatatatactgtctcgttacttacctgacaaagccatactagga 360
           |||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 410 tgattatttctcctctaatatatactgtctcgttacttaaatgagaaagccatactagga 351

                                                                       
Query: 361 ttaaaatgtgattgttaatatgattgcatacacaatattgtatgtgaagaaacttatgtg 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttaaaatgtgattgttaatgtgattgcatacacaatattgtatgtgaagaaacttatgtg 291

                                                                       
Query: 421 acagaaaatctgaacttttagtattttaaaagaataaatctctagctatttaataagtca 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 290 acagaaaatctgaacttttagtattttacaagaataaatctctagctatttaataagtca 231

                                         
Query: 481 tgaatgttttataagaatgtgctaggtaaa 510
           ||||||||||||||||||||||||||||||
Sbjct: 230 tgaatgttttataagaatgtgctaggtaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)