BAC Information

Click to search

BAC

Clone NameMSMg01-292M23
Chromosome15 (Build37)
Map Location 101,734,847 - 101,735,138
singlet/doubletsinglet
Overlap genenone
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76
Downstream geneKrt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M23.T7 (MSMg01no292_m23.b1)MSMg01-292M23.TJ (MSMg01no292_m23.g1)
ACCAG421429AG421430
length804763
length of high quality
(start - end)		198 (46 - 243)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no292_m23.b1 PHD_FILE: MSMg01no292_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:59 2005CHROMAT_FILE: MSMg01no292_m23.g1 PHD_FILE: MSMg01no292_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATCATATTAACTTGTTACGCAGATATAAATGTGGAGAAAACAC
AAAACATTCAAGAAGTCAGGCATAATATTTGAGACAGGAGGACAGTTGTG
TGTGTGTGTGTGTGTGTGGTGGTAGAGAATAGCTCATTTGCTGGCATACA
AGCATGAAGTCCTGGGTTTAATCCTTACTATATAAACTGACTGTGGCAGG
ATACACTTGAAATGCTAGACTAAGTACGTAGAGGAACGAAGACCACAAGT
TACAGGCCATCTCCAGCTACAGCTTTTTTTGTTTATGATAGCCTGCCATA
CACCACACCCTGTCCTTTTTTTTTTTCCCCCCCCCCCCCCACCATTTCCT
TAGCTAGTTACTAGGAAAACCCCCCTCTCCTACCAATAACAAATTATGAT
TTCTATGATAAATCCCTTCTTTTATCACTCACACTCCCTCTCATCCTCAT
GCGTCTCTACCGCTATATCTCGTTTCCACTATTGCTCATCCTCATTTTAT
TCCATCTATTCCTCTCTCTCCCTCCATTTTTTCCCCTATACTTTCTTTTT
CCCCTCTGTCACACTCCATACCCATATTCCTCTCCTCTTTTCTCTTCTTA
CTTCCTCTGTTTTCCCAATCATCCTCAAATCCCATTTATTAACACCTTTT
TCTTCCTCTCCCTTTTTCTCTTTTTTTACCCCCTCACCTTTTTCTATTGT
CCCCCTCCCTTTTTACATTTCCTCCCCTTTTATCAACCACTTCTTTCTCC
GCCN

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCAGCGCCAGACAGAGTAAGC
GCGTGAGTACCAACCGTAGGAAGCAAGGGATTTAGTGGTAATAACATTGT
CTACCATGAAGCTGCCATCATCACCAACCTGGCATGTGCCCACAGTGCCA
ACACTTTACTAGGTCAGACACTGGGGCATCTCACTTGTCTCCTGTCCTTT
CTTCAGAGGGACATCATCCAGAGAAATAGCATTCCCTACTCAAAAACCCA
GGAACTCCAATTTTCTGGAAGGTGAATGAAATAGAGTCGGAAGCTGGATC
CCTCCAGGTCTCTGCTCCTTTTGTCTTTGCCCACCCCCCCATTTTTCATC
TATGAGATACCCTCTACTTNCCACCCCACCAAGCATCAATCCCCTGGCCC
AGCTTAACGAAGTATTTCTGTCTGTGGCCTCTGTGCTCTGAGTGCCCAGG
CAGCAGGCCATGACCAGATGGAGCCAGTGAAATCTCAGGGATAGAGCTCT
CTCACCCAGTCAATCTGGTAGAAATAGGAGCCTGGACTCAGGATATCAAG
AGAGCCTAATGAGGCTGGTCCACCTGTCAGTTTAAAAGAGAAGAGTGAAG
GCTTTGGAATCCTTGCTCCTAAATCCCTCCCGATGTGCACGCGACCTTCC
AGACAGCACTTCTGTGACCAAGGGATTCTTGACCAGTTCATCTTGGTACT
TGGCACAGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m23.g1 MSMg01no292_m23.g1 CHROMAT_FILE:
MSMg01no292_m23.g1 PHD_FILE: MSMg01no292_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:59 2005
         (294 letters)



>mm_chr15_101734647_101735340
          Length = 694

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccagcgccagacagagtaagcgcgtgagtaccaaccgtaggaagcaagggatttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccagcgccagacagagtaagcgcgtgagtaccaaccgtaggaagcaagggatttagt 260

                                                                       
Query: 61  ggtaataacattgtctaccatgaagctgccatcatcaccaacctggcatgtgcccacagt 120
           ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ggtaagaacattgtttaccatgaagctgccatcgtcaccaacctggcatgtgcccacagt 320

                                                                       
Query: 121 gccaacactttactaggtcagacactggggcatctcacttgtctcctgtcctttcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaacactttactaggtcagacactggggcatctcacttgtctcctgtcctttcttcag 380

                                                                       
Query: 181 agggacatcatccagagaaatagcattccctactcaaaaacccaggaactccaattttct 240
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 381 agggacatcatccagagaaatagcattccctactcaaaaacccaagaactcccattttct 440

                                                               
Query: 241 ggaaggtgaatgaaatagagtcggaagctggatccctccaggtctctgctcc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaggtgaatgaaatagagtcggaagctggatccctccaggtctctgctcc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |