BAC Information

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BAC

Clone NameMSMg01-293C08
Chromosome15 (Build37)
Map Location 16,095,698 - 16,095,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040033, LOC100040046, EG239341, LOC100040087
Downstream geneLOC624183, LOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C08.T7 (MSMg01no293_c08.b1)MSMg01-293C08.TJ (MSMg01no293_c08.g1)
ACCAG421672AG421673
length729769
length of high quality
(start - end)
317 (38 - 354)238 (68 - 305)
definitionCHROMAT_FILE: MSMg01no293_c08.b1 PHD_FILE: MSMg01no293_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:27 2005CHROMAT_FILE: MSMg01no293_c08.g1 PHD_FILE: MSMg01no293_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTATTCCTTCTTCTTGAGCTTCATGTGGTCTGTGAATTGTATCTTGGGT
ATTTGGAGCTTTGGGGCTACTATCCACTTATAAGTGAGTGCATACCATGT
GTGTTCTTTTGTGACTGGGTTACTTCAGTCAGGAAGATATTTTCTAGATC
CATTCATTTACGCAGATATTTCATGAAGTCATTGTTTTTAATAACTGAGT
AGCACTTAATTGTGTAAATGTACCATGTTTTCTGTATCAATTCCTCTGTT
GAAGGGCATCTGGGTTCTTTCCAGCTATTATAAACAGGCTGCTATGAACA
AAGTGTATTTTGTCTCCTCCGCCCCCCCAAGGCTAATCTTATAAAGGACA
GAATTTAATTGCCCCACCCCTCACAAGTACAGAGTTTCAGTTCATTATCA
TCAAGGTGGGAGCATGTCAGCATCTAGGCAGAAATGGTGCAGGTAGAGCT
GAGAGTTCTAAAACTTCATCTGCAGCCTCCTAGTAGAAGACTATCTTTCA
GGCAGCTAGGTGTAGCGTCAAATTACTGTCATATTTATATTTGAATTCTA
TGGGTTTTGCGTGTGCGTGCGTGTTTAAACCGCGACCCCTTCATTTATGT
AAATATTTTTATTTTTTTTGACCCCCATCCCTCTTAACTTCATTGTATTT
CACTTATACATCTCATATTTTTCTCCCCC
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTTCAGCAAGAAATGTGTATGATTCTCT
AGCACTTATCTACTTGAGTTAGTTTACTCAGCTTTATTGTCACAGTCCTA
TGCAATGGAGACTCGTCTAGACCTCTTATTTCAATACACTGATCAAATGT
TTTTGATAATGCTCATGTATTTGGCTAATTCATACAATATCTTCTCTTAT
GGATATTTTTCTCAGCAAATAATTAAATTTGTGGATGAATTTAAATTTAC
TTTATTTGACAATGTTATTTTTTTGTCCTTGAATTTTAAAACAGCCCTAC
ATATTTTAANGTGGACTCAAAAACAGNGCCCCTAAAATATTTCTTTATCT
ATTGTTACTTCCCCCCCCCCAAAAACTCATTNAAAATTGCTTGGGGGGGG
GTGGCCGTATTTGATTTTGTTTTTTCGCCACTCTAGCTTATACTCTTTAC
TGACTACTTTTTCTTACTTTTTCCCTCTTCGTTTTCCCCCTTCCCCCCCC
TTACTTGCCCTCATAACCCCTTAATCCTGTTCTCCCTCCCCCCTGTTTTC
TTGTATTTTGTCTATTCCCCTCTTTATTCTACCCCCTCTTGTTCTTTCTG
TTATTTTTCTCCACCGCTATTTCTTTTTTATCTCTTTATACTATCCGTTC
TTTCTTTCTCTATCCTTTCTCCCCTATCTCTTCACCTTCTTTTCCCATTT
CTCCCTCCTTTATTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c08.g1 MSMg01no293_c08.g1 CHROMAT_FILE:
MSMg01no293_c08.g1 PHD_FILE: MSMg01no293_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:27 2005
         (238 letters)



>mm_chr15_16095498_16096135
          Length = 638

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttttcagcaagaaatgtgtatgattctctagcacttatctacttgagttagtttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 437 tctgttttcagcaagaaatgtgtatgattctctagcacttatctacttgagttagcttac 378

                                                                       
Query: 61  tcagctttattgtcacagtcctatgcaatggagactcgtctagacctcttatttcaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcagctttattgtcacagtcctatgcaatggagactcgtctagacctcttatttcaatac 318

                                                                       
Query: 121 actgatcaaatgtttttgataatgctcatgtatttggctaattcatacaatatcttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actgatcaaatgtttttgataatgctcatgtatttggctaattcatacaatatcttctct 258

                                                                    
Query: 181 tatggatatttttctcagcaaataattaaatttgtggatgaatttaaatttacttta 237
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tatggatatttttctcagtaaataattaaatttgtggatgaatttaaatttacttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)