BAC Information

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BAC

Clone NameMSMg01-294D10
Chromosome15 (Build37)
Map Location 11,233,398 - 11,233,711
singlet/doubletsinglet
Overlap geneAdamts12
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3
Downstream geneTars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294D10.T7 (MSMg01no294_d10.b1)MSMg01-294D10.TJ (MSMg01no294_d10.g1)
ACCAG422445AG422446
length761743
length of high quality
(start - end)
319 (48 - 366)451 (132 - 582)
definitionCHROMAT_FILE: MSMg01no294_d10.b1 PHD_FILE: MSMg01no294_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:51 2005CHROMAT_FILE: MSMg01no294_d10.g1 PHD_FILE: MSMg01no294_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGGAACTGCCATATTGCTGTATTTCACAGACACTTGAGATTT
ATGGCAGTGTTCAAAGTAGAATCTTACCTGTCTGCATTCAAAGCCTCTAA
CACTGGGTCGCTGTATGACTGGAACAGGTCTCGAAGCATCTCTATGCTAC
AGTCTCTTCCCCTGAGAAATGGGGCTATTTTTCTACTAATATTAAATTAA
ATATGATTGACTTTCAATATTTCTTTGAGTTTTTGAAAGGAACATATTTA
TTTGTTTTTAAGTCTCAAGTATTTCTGTAGGGTTTTGAAAAACTGACAGG
GGCTATGAAGCATGTTTTTTTTGCTCCCCCCCCCCCCCGTTACCCTGAGC
TAAAGAACTAGGTATGTTAGTCATTTCCCTTAGAAAAAACAAATACCTCT
GATGGACAGAGAGAAAACTAGAGTAACACAGAAAGCTAGTCTTGGCCTTC
TTGACAGATAACAAAGTCATCATTTACTGGCACACATTGTGTTTCAGGCA
ATCTGATAAGTGCTTAAATGGCTTATTTTATTCAACCTTACCAAAAAAGA
AATGAGGAAAAAGTTAATATGGAAGAAAAACTTTAAAGTTAATAAGAACT
TAGAGACTAACACATTTAGAGAATTTCCCAGGGTCTGGTAAAAACCAATA
ATTGGGGTTATTAGTTTGGTGGAAACTGAAAACCCCCCGTGAAATGGATA
AACATTGCCCC
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACCTCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGTGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CTGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCCTAAAGGGACTCACACAATATGTATTCACTGG
AAAGTGGATATTAGCCCCCAACCTAGGATACCCCAGATATTAGAATACAT
TTTGCTAAACACCTTGAAACTCTAGAAGAATGATCACTGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_d10.b1 MSMg01no294_d10.b1 CHROMAT_FILE:
MSMg01no294_d10.b1 PHD_FILE: MSMg01no294_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:51 2005
         (319 letters)



>mm_chr15_11233018_11233736
          Length = 719

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggaactgccatattgctgtatttcacagacacttgagatttatggcagtgtt 64
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 694 gaattctaggaattgccatattgctgtattttacagacacttgagatttatggcagtgtt 635

                                                                       
Query: 65  caaagtagaatcttacctgtctgcattcaaagcctctaacactgggtcgctgtatgactg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caaagtagaatcttagctgtctgcattcaaagcctctaacactgggtcgctgtatgactg 575

                                                                       
Query: 125 gaacaggtctcgaagcatctctatgctacagtctcttcccctgagaaatggggctatttt 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaacaggtctcaaagcatctctatgctacagtctcttcccctgagaaatggggctatttt 515

                                                                       
Query: 185 tctactaatattaaattaaatatgattgactttcaatatttctttgagtttttgaaagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tctactaatattaaattaaatatgattgactttcaatatttctttgagtttttgaaagga 455

                                                                       
Query: 245 acatatttatttgtttttaagtctcaagtatttctgtagggttttgaaaaactgacaggg 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 454 acatatttatttgtttttaagtctcaattatttctgtagggttttgaaaaactgacaggg 395

                         
Query: 305 gctatgaagcatgt 318
           ||||||||||||||
Sbjct: 394 gctatgaagcatgt 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)