BAC Information

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BAC

Clone NameMSMg01-294L17
Chromosome15 (Build37)
Map Location 90,340,204 - 90,340,507
singlet/doubletsinglet
Overlap geneCpne8
Upstream geneShank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
Downstream geneEG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L17.T7 (MSMg01no294_l17.b1)MSMg01-294L17.TJ (MSMg01no294_l17.g1)
ACCAG422830AG422831
length741736
length of high quality
(start - end)
319 (51 - 369)327 (385 - 711)
definitionCHROMAT_FILE: MSMg01no294_l17.b1 PHD_FILE: MSMg01no294_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:28 2005CHROMAT_FILE: MSMg01no294_l17.g1 PHD_FILE: MSMg01no294_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTAGTCAACAATAGATATTACGCAGATCACAATATTATG
ATCTAAAAATGTGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTAATTTGAGGAGAGGGTGTAAAAAATCAAAATGACCCGAGA
AGCACATTAGACATTTTAAAATGAAAGGTATCTCAAATTCTACATAAGTC
TGTGTACATATAGAGACTTTATTTAAAATCTATAAAGGAGAAAATTAAAG
ATAATTGCATTTATCTCTAGGTGGTTAGGTATCTAGTGTTTTTTTTTTTT
ACTCCATATCCTTAACATATTTTATATTTTCCCCCCTCCATATAGGTAGT
AATCGGGTATTACAGTCTGAAAAAAAGTAAATGTTATCAATTTGGTTTCA
CTTGAAAAATATTTCCTGTGTATACAGTTTGCAGGCCACAGCCGCCTTAT
TATGCCTAGAGTAAGGGTCATAAGAAATATAACTTGAAGTGAGAAATAGA
AAAACAAGAGAAAGATTCAAAGAGGATATCCATGTATTTCAAGTGAATGG
AGCTGGTTAGTAGCAAGTCCTTATTCTGGGAACAGTGTTGGCATGGAGAC
CGCATTCTTCCTTTCTCACATCACCCATGCCCAGGTACTGTCAAGGTTAA
TTCCTGGTCCCCATTTCACAAGTTATTCAAGTAAGACCATG
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGCTGGGTCTTCCGTGCTA
AAGGCAATCTCTCTGGGTTTAGGTGACCATTTTATCTTACTGCTCACACA
GTACTTGAAAGTCAGGTGCCTCCGAGGGCTTTTGCCCAATGGTTGTATCA
GGTGCACAGCTGAAAGGAACATCTGTAAGCAGCTGATATCTTCCTTGTGA
GCATCCAGCCATCTCGGATGTTTGCTCATCTCCTCATTCTCTCCATCACT
TGAAGTATGAAATTATCTCTAATGACTTTAGTATGTTAGAGTCTTATCTC
CATGGAAACTTAAGCTATATTTAATTTGCCCATCACCTACTTCCTCATTC
AGGAATTCTGTAAACATTTCTCTTTTGACTTTATTGACCCACTCATTAGT
CTATAGTGTGCCCTTTAATCTCTGAATTTATGTCATTTCTAGAGACTCTT
CTGTTGTGGGTGTCAAGCTTTGTTTCACTGTGGTCAGAGAGTATACATGG
AATCATTCAGGGGTTTTGGTTTTGCTTTTGTTTTTTTTTGTACTTACTGA
GATTTGTTTAGTGCCTGCTGTGTGGTCTGTTTTGGAGAATCTCCTGTGGG
CTTCAGAGTAGAATGATACTTGGGTAAAGTATTCATAGATAGCTGTAGTT
ACATCTGTTGGAGATGTGATGGCATTTAATATGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l17.b1 MSMg01no294_l17.b1 CHROMAT_FILE:
MSMg01no294_l17.b1 PHD_FILE: MSMg01no294_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:28 2005
         (319 letters)



>mm_chr15_90339984_90340707
          Length = 724

 Score =  522 bits (270), Expect = e-152
 Identities = 298/320 (93%), Gaps = 21/320 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagtcaacaatagatattacgcagatcacaatattatgatctaaaaatgtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gaattcactagtcaacaatagatattacgcagatcacaatattatgatctaaaaatgtgt 280

                                                                       
Query: 65  gtgtgtgtgtgtgtccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatttgaggagagg 124
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ----------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatttgaggagagg 324

                                                                       
Query: 125 gtgtaaaaaatcaaaatgacccgagaagcacattagacattttaaaatgaaaggtatctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtaaaaaatcaaaatgacccgagaagcacattagacattttaaaatgaaaggtatctc 384

                                                                       
Query: 185 aaattctacataagtctgtgtacatatagagactttatttaaaatctataaaggagaaaa 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattccacataagtctgtgtacatatagagactttatttaaaatctataaaggagaaaa 444

                                                                       
Query: 245 ttaaagataattgcatttatctctaggtggttaggtatctagtgtttttttttttt---- 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 445 ttaaagataattgcatttatctctaggtggttaggtatctagtgtttttttttttttttt 504

                               
Query: 301 -actccatatccttaacata 319
            |||||||||||||||||||
Sbjct: 505 tactccatatccttaacata 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 724
Length adjustment: 9
Effective length of query: 310
Effective length of database: 715
Effective search space:   221650
Effective search space used:   221650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)