BAC Information

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BAC

Clone NameMSMg01-295C19
Chromosome15 (Build37)
Map Location 48,804,858 - 48,805,190
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146
Downstream geneLOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295C19.T7 (MSMg01no295_c19.b1)MSMg01-295C19.TJ (MSMg01no295_c19.g1)
ACCAG423145AG423146
length767761
length of high quality
(start - end)
333 (435 - 767)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no295_c19.b1 PHD_FILE: MSMg01no295_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:01 2005CHROMAT_FILE: MSMg01no295_c19.g1 PHD_FILE: MSMg01no295_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATACATGGACGTTCACAACCATCTATATCCCCAGTTTAAATGAGTCT
GAAACTCTCCTCCATTCTCCAAGTTACTGGGTATTCATGTAGTGAATATG
TATACTAAATACACATAAATAAATAAACACAAATATACCATAACAATTTT
ATGAATGGGAGTATAAGTAATAGAGAGTATTTATTAAGTTATAGTATGTA
TATATAAAACTAGAAATAATTGATTGATTTTTAAAAGGAAAAGAATTCCT
AAAATCCTCTTATATTATACTTATACTTACAGCAGCATTCTTAGCTTAAT
AATAAAAATTTTTTTTTTTACCCACCCCCACCGAAATTGGATTCAGAGAT
GCTATTTCCCCTTCCTATACATAAAGAGAGAAAATTACTTGTTGGCTTTG
AGTTCTCCAGATTAATTTCCAGGAATAGTGCTCTATATGGAAGACATTTA
GTGTGTATTTCTTGTTAAGATTTAATTGTTTTAAGTAGAGAGGTAAAGTT
ATATCATTTCTTTTGATTTCTTTCCACAAACTCCAAGTCATAAAAGTTCT
TTTTTCTGTCTTTCACCTCTGGATTCTGGTAAAGGTACAACTATGTTTCT
AGAGTTTACAGTGGGAATTCCAATGTCAAACAAACAGTAAAATCCAGGGT
AGAAACAAACTCATTGCCTTCTTTTATCTACAATAGCTCATGCTTTTATT
TTTATATTATGCATATG
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGGATGGAAATGGAGAAGATCCTGAGG
AAAAGAAGGCTCCGCTACAGCCCCAAAGTGGGATCCAGCTCAAGGGCAGA
TCCCAAGGCCTGACACTATTACTGAGGCTGTAGAGCACTCACAAAAAGGG
ATCTATCATGACTGCCCCCCAAAAGACTCAAAAAGCAGATAAAAGAGTCA
GATGTAGATACTTGCACCCAACTAATGGACAGAAGCTGCTGACCCCTGTA
GTTGAACTAGGGAAAAGCTGGAAGAAGCTGAGAAGGATGATCCTGTAGGA
GGACCAATTTTTTCTATTAACTCGCATCCCTGAGATCTCTCAGACACTGG
ACCACCAACCACCCACCATACATCAGCTGATATGAGTCACCCAACACATA
TGCAGCAGAGGACTTCTGGGTATGGGTTCAGTCAGTGAAGATGCACCTGA
CCCTGAAGAGACTGGAGACCCTGGGAGGTTTAGAGGTTTGATGGGATGAA
GGGTGGGGTNGGCACTCTTTGCGCATGATTCTTCCCCGCACCCTCCTATT
CCAAGCTTGCTGCCCTGCCTTTTCCCATCATGCCTTCCATTCTCCCCCCC
CTTTTTAGAATAACTACTGACTCGTTTATCTGTTCACCGCCGCACATTAT
TCCTTCTTCTTCCCCCACATCATCCTCCAACTCCTTATCTGCTAAACTTA
GCTTTCGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_c19.b1 MSMg01no295_c19.b1 CHROMAT_FILE:
MSMg01no295_c19.b1 PHD_FILE: MSMg01no295_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:01 2005
         (333 letters)



>mm_chr15_48804658_48805390
          Length = 733

 Score =  592 bits (306), Expect = e-173
 Identities = 327/334 (97%), Gaps = 2/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacttgttggctttgagttctccagattaatttccaggaatagtgctctatatggaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttacttgttggctttgagttctccagattaatttccaggaatagtgctctatatggaaga 474

                                                                       
Query: 61  catttagtgtgtatttcttgttaagatttaattgttttaagtagagaggtaaagttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 catttagtgtgtatttcttgttaagatttaattgttttaagtagagaggtaaagttatat 414

                                                                       
Query: 121 catttcttttgatttctttccacaaactccaagtcataaaagttcttttttctgtctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 413 catttcttttgatttctttccacaaactccaagtcataaaagttcttttttctttctttc 354

                                                                       
Query: 181 acctctggattctggtaaaggtacaactatgtttctagagtttacagtgggaattccaat 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 353 acctctggattctggtaaaggtacaactatgtttttagagtttacagtgggaattccaat 294

                                                                       
Query: 241 gtcaaacaaacagtaaaatccagggtagaaacaaactcattgccttcttttatctacaat 300
           |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 293 gtcaaacaaatagtaaaattcagggtagaaacaagctcattgccttcttttatctacaat 234

                                             
Query: 301 agctcatgcttttatttttatatt-atgcatatg 333
           |||||||||||||||||||| ||| |||||||||
Sbjct: 233 agctcatgcttttattttta-atttatgcatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)