BAC Information

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BAC

Clone NameMSMg01-295I08
Chromosome15 (Build37)
Map Location 55,368,195 - 55,368,503
singlet/doubletsinglet
Overlap geneMrpl13
Upstream geneMal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1
Downstream geneMtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I08.T7 (MSMg01no295_i08.b1)MSMg01-295I08.TJ (MSMg01no295_i08.g1)
ACCAG423392AG423393
length747750
length of high quality
(start - end)
313 (47 - 359)281 (81 - 361)
definitionCHROMAT_FILE: MSMg01no295_i08.b1 PHD_FILE: MSMg01no295_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:29 2005CHROMAT_FILE: MSMg01no295_i08.g1 PHD_FILE: MSMg01no295_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATAGTAAGAAATTCCACTTTTAGTGTATTGAATTGAATGGTAT
TTGAGATATTTTAATTCTACATTTAAAGTATACAGAAATGCACTAGAACT
TGAAGTGCTAAACCTGAATGGCACAGGCCAGCAAGGCAATCCCTTGTGGT
TACTGAAACTTAAAGTTCCATCAAAGTCAAGTCATCAGCAACAGTGATGA
CAGCACAGCTCAGTGCTACAGCGGCTGGCGCTGGCCGGCTAGGAAGCTTT
TCCTGGGCACATGCGTTCCATGCACTAAAAACTAACTGGACCTGATATCA
GCTCTAGCATGTTTATAAAATCGCACATTTTGAATGATTTATGTTAAATG
ATTACTATACCTCCACCACAATAAAGTTTAAATACATGTATATCCATTTA
CTCTTTTGGCAATAGAAGTTAACATATGGCCTAACTACTTAGGAGGAAAG
ACTTTAATGAACCATAAAGAAAAGCCTGCCGTTTAATGTGTATTCCTGCT
ACAGGGAATACAAAGTGAAAGAGCAGGAAAATCCATCCCCACAGTAGGAA
TGCGACTAAGCCAAGCAGCTCTAGGCTCCACTGAGAGTCCTTAAAAATCA
TTGCAGAGAAGCCCTTTCTGTATTTATACAGTGGAGACAGAGACAGTCAG
TTATAAAAAGAAGCAGTTGTGACCAGCATTGTTTGATTTAATAACAN
ACTCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGAGCAATCTCTCCAGT
CCCATATTGTAATTTTAATTTTTTCAAAACTTATTTTTAATGATGCTTTA
ACCTCCCTTGTAGCCCACTACCCACTAGAAGTAGTGGAAACCAAAGGATA
GGGGGAAAAGTAGACCTGTTAAGAGAGGTTCTTTGCAGCAACTCCTGTCT
GGTCTGTGTTATCTGGAAATTGTCAGTTCAAGTCATAGGTTAACAATGGC
AGCTCGATCCACTTGTACTTCATGGGTATATCAGCAGTCCAGTCCAGTAG
AGTCAGGATATCTTTCATTATTCCCCCCCGCCCCCCCGACCTAGCAGAGG
TAGCCAGGCCTCAGCCTTGCCTCGAAACAAAAAAAAAAAACTGGGGGAGG
GGGGGAAGTTCTCAGCTGTGTTTCACTCAGGGAAGTGAATATCAGTGAAG
CCATGAGACCCACAAGCTTTGCACAACTAGCTGTGCCAACAAGCCAAGTG
TGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CACTTTCTCACTCTGTTTCTGTTTCGCTCCGTGTGCGAGTTTGCGCGCGT
GTGCGCGGGGCCCGTTTGTGTGTTCTCCTCGCCTCATTTGCGCCCTTTTT
CTTGTTGCTTTTACTCTCCCCTTTTTCCTTTGCCTCCGTTTCCGCCCTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i08.b1 MSMg01no295_i08.b1 CHROMAT_FILE:
MSMg01no295_i08.b1 PHD_FILE: MSMg01no295_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:29 2005
         (313 letters)



>mm_chr15_55367991_55368703
          Length = 713

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatagtaagaaattccacttttagtgtattgaattgaatggtatttgagatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatagtaagaaattccacttttagtgtattgaattgaatggtatttgagatatt 264

                                                                       
Query: 65  ttaattctacatttaaagtatacagaaatgcactagaacttgaagtgctaaacctgaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaattctacatttaaagtatacagaaatgcactagaacttgaagtgctaaacctgaatg 324

                                                                       
Query: 125 gcacaggccagcaaggcaatcccttgtggttactgaaacttaaagttccatcaaagtcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcacaggccagcaaggcaatcccttgtggttactgaaacttaaagttccatcaaagtcaa 384

                                                                       
Query: 185 gtcatcagcaacagtgatgacagcacagctcagtgctacagcggctggcgctggccggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcatcagcaacagtgatgacagcacagctcagtgctacagcggctggcgctggccggct 444

                                                                       
Query: 245 aggaagcttttcctgggcacatgcgttccatgcactaaaaactaactggacctgatatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaagcttttcctgggcacatgcgttccatgcactaaaaactaactggacctgatatca 504

                    
Query: 305 gctctagca 313
           |||||||||
Sbjct: 505 gctctagca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)