BAC Information

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BAC

Clone NameMSMg01-295O01
Chromosome15 (Build37)
Map Location 83,183,803 - 83,184,126
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
Downstream genePacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295O01.T7 (MSMg01no295_o01.b1)MSMg01-295O01.TJ (MSMg01no295_o01.g1)
ACCAG423641AG423642
length733744
length of high quality
(start - end)
330 (50 - 379)665 (80 - 744)
definitionCHROMAT_FILE: MSMg01no295_o01.b1 PHD_FILE: MSMg01no295_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:55 2005CHROMAT_FILE: MSMg01no295_o01.g1 PHD_FILE: MSMg01no295_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGTGTGGTGGGGCACACCTTTAGTTCCACCACTCAGGAGG
CAGAGATTGGAGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGT
GAATTTCAGGACAGCCAGGGCTACACAGAGAATTCCTATCTCAAAAAGAA
AAACAACAACAACAACAAAACAACAACAAAAAAGCCAAACTGAACCCAAA
CAAACAAAAATTCCAAAAAACGTAAAACAACAAAGTGTGGGTGTGGTAGT
TTCTGGTGAGCTTACTTCACAACAGTTTCTTTGATAAACAAGTGTTTATT
TCAAACTCAATGTTGTATTATGTATACCACATTGTGAGCACACAGTATGC
ATGTAGATATATAATATTCACTCTTCCATCCATCCATCCATCCATACATA
CATACAAACATACAAAAAACCATTACCCGTAATGTGTGTGGTATCCACTG
TTGTGACAAACATTTGAGACAACTGAAATGAATAAAGATTTATTTTGGCT
CATGGCTTTGTTCCGTGGTTCTTTGGCCTTATGGCTGTAGGCCTGAGGCA
AAACTGAACACCATAGAAAGAAACACTTGGCAAAGAAGAGTGCTTCCCTC
ATGATAGAATGGAGACTGGGTTGAGGGCAAGATAGTCTTTCAGTGTCCCA
CATCCTACAAATAGGCCCGATGAGCTAACTGTN
ATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAGAGTGACATA
GCAAGATCATCTTGCTCAAAAGTACGTAAATATCTTAAAAATAAAAAATC
ATATATAATTAGGATTTTAATATAGTACCTGATTGTATGTTCATGGTTTT
AAAAGTGAGATTCTAAACCCATCTCTTCTGCTCTTTTTTGCAACTTTTGA
GAGAGGTTCTCATGTAGACCAGGCTAACCTCAAACACAGTAAATAGCTAA
AGATGACCTTGAACCTTTTTATTGTTGTTGTTGTTGTTGTTTGAGACAGT
GTTTCTCTGTGTAGCTTTGGCTGTCCTGCAACTTAAGTTAACCTGGAACT
CACAGAGATTCTCCTGCCTCTGCCTCCTGAGTGCTGGCTTAAAAGCATGC
GCCACTACTGCCCACTTGACCTTGACCATCTAAGCCTCCAGTCTCTACCC
CTGAGATGCATCACCCATGGGCCGTGTCCCATTCTATTTCATCCTAGGAT
TGAACCTTGGGCATCATACATATCAGGTGAGCACTCTGACCATTGAACTA
CAGATTCAGCTCATTCATTCACTCATTCATTCGGTCGGTCAGTCAGTCAA
GGTTGCTCAGGCCAGTGCTTGTGAGTTATTGTGCTCAGCACACCACCACC
ACCACCACCATCACCACCACCACCACCACCACCACCACCACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_o01.b1 MSMg01no295_o01.b1 CHROMAT_FILE:
MSMg01no295_o01.b1 PHD_FILE: MSMg01no295_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:55 2005
         (330 letters)



>mm_chr15_83183599_83184328
          Length = 730

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtgtggtggggcacacctttagttccaccactcaggaggcagagattggagg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcaggtgtggtggggcacacctttagttccaccactcaggaggcagaggttggagg 264

                                                                       
Query: 65  atctctgtgagtttgaggccagcctggtctacagagtgaatttcaggacagccagggcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctctgtgagtttgaggccagcctggtctacagagtgaatttcaggacagccagggcta 324

                                                                       
Query: 125 cacagagaattcctatctcaaaaagaaaaacaacaacaacaacaaaacaacaacaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagagaattcctatctcaaaaagaaaaacaacaacaacaacaaaacaacaacaaaaaa 384

                                                                       
Query: 185 gccaaactgaacccaaacaaacaaaaattccaaaaaacgtaaaacaacaaagtgtgggtg 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 gccaaactgaacccaaacaaacaaaaactccaaaaaacgtaaaacaacaaagtgtgggtg 444

                                                                       
Query: 245 tggtagtttctggtgagcttacttcacaacagtttctttgataaacaagtgtttatttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggtagtttctggtgagcttacttcacaacagtttctttgataaacaagtgtttatttca 504

                                   
Query: 305 aactcaatgttgtattatgtatac 328
           ||||||||||||||  ||||||||
Sbjct: 505 aactcaatgttgtacaatgtatac 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)