BAC Information

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BAC

Clone NameMSMg01-298B20
Chromosome15 (Build37)
Map Location 7,605,872 - 7,606,336
singlet/doubletsinglet
Overlap genenone
Upstream geneFyb, 4921505C17Rik, Osmr, Lifr, Egflam
Downstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298B20.T7 (MSMg01no298_b20.b1)MSMg01-298B20.TJ (MSMg01no298_b20.g1)
ACCAG425256AG425257
length733743
length of high quality
(start - end)
532 (63 - 594)463 (70 - 532)
definitionCHROMAT_FILE: MSMg01no298_b20.b1 PHD_FILE: MSMg01no298_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:43 2005CHROMAT_FILE: MSMg01no298_b20.g1 PHD_FILE: MSMg01no298_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAGGCGCGGAATTCATAGT
ACTTTCCGCACCTCGGCAGGATATTGTTCAAAGAATCCGTCCTGTAAACT
TCTCTGAGCGATTCCGTGAGGTACAGCACTAACCCTGATACTGAGAAAGT
TATCGATGGTTTCAGGAAGTTTCTTTTGACAAGGACCAAAATGTCTACTA
CAAATTTTTCTGGAGATTCTTTATAAGATTTATAAGATATATATAAGATG
ATATATATATAAGATTATAAGATTTATAAGATTCTTCCCCAGGAATAAAG
CTTTGATTCAATCATTTCTTCCTTTTTATAGTCATTCTCTTGTCATTATA
ATAATGTGGTTTAATGTGACACTTTTTGTGTGTGCGATTGTGTTTTCTCC
TGTGTGCTTTTCCTCTTACTAAAGGTGATGGTGTTCATATCTCCATGCCC
AGTGGCACTCAGACCATCACACCCCCAGCGTGAGGTCAGCTCTGTGTCCA
GTGGCACTCAGACCATCACACCCCCAGTGTGAGGTCAGCTCCATGTCCAG
TGGCACTCAGACCATCACACCCCCAGTGTGAGGTCAGCTCCGTGTCCAGT
GGCACTCAGACCATCACACCCCCAGTGTGAGGTCAGCTCTGTGTCCAGTG
GCACTCAGACTGTCATGTCCCCAGTGTGAGGTCAGCACGCAGTGCCTTTG
CAGGATGACTTTGCTTCCTGAGAAATAATGGCA
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCAGAAATTCTTGGTCCCCAGCTGATGGCACAACTCT
GGAAGATTGTAGAAACTTTACACGGTGGGGCATAACTAAGGACAATAGTT
CACCGAGAACTGGTCCCTGGGGATATGATGTCCTTGGGTGCTTCCTCCCT
CTCTCCCTGGCCACACAGTATCAACTGCTCTGACCTGCCACACCCTCCCC
AGCAGAGTGAGCCATCACCTCCAAAATCATGAGTTCAGATAAGCCTTTTT
TTTTTTTAATCTGCTTCTGTTGGTTATTTGGTCATAGTAATAATGAAAGT
ATCTAACGCAGAAACCAATGAAAGGAAAAGGGTACTAGAGTATGAAAGAA
TAAAGTATAAGATCGGGCAATCCCAGATGCCTTTGCTTAGGACTGTGAAA
GGATTTGAGGTGGAGAACAGTGATGTAATGAGTGAGGGCGTGGTTTCAGG
GTAGATATGTAATGATTGAGGGCGAGGTTGCATAGCACATGTGTAATAAG
CAAAGTTATAGTTTCAGAGTAGATACTTAATAAACAAGGACATGGTTTCA
GAGTAGATATGTAATGAATATGGGTGTGGTTTCAGGGTAAATGGTAGAGC
CAGAAATCACACTGCTCCAGTTGGGCCACCCTCTGCCTTCAGTTGGGCAT
TCTGCAAGAGATCTTCTCTATAGATGGAGAAATCCCCCGGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_b20.g1 MSMg01no298_b20.g1 CHROMAT_FILE:
MSMg01no298_b20.g1 PHD_FILE: MSMg01no298_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:43 2005
         (463 letters)



>mm_chr15_7605672_7606536
          Length = 865

 Score =  849 bits (439), Expect = 0.0
 Identities = 458/465 (98%), Gaps = 2/465 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttggtccccagctgatggcacaactctggaagattgtagaaactttacacggtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 201 attcttggtccccagctgatggcacaactctggaagattgtagaaactttacaaggtagg 260

                                                                       
Query: 61  gcataactaaggacaatagttcaccgagaactggtccctggggatatgatgtccttgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcataactaaggacaatagttcaccgagaactggtccctggggatatgatgtccttgggt 320

                                                                       
Query: 121 gcttcctccctctctccctggccacacagtatcaactgctctgacctgccacaccctccc 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gcttcctccctctctccctggccacacagaatcaactgctctgacctgccacaccctccc 380

                                                                       
Query: 181 cagcagagtgagccatcacctccaaaatcatgagttcagataagcctttttttttttt-- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 cagcagagtgagccatcacctccaaaatcatgagttcagataagccttttttttttttta 440

                                                                       
Query: 239 aatctgcttctgttggttatttggtcatagtaataatgaaagtatctaacgcagaaacca 298
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctgcttctgttgggtatttggtcatagtaataatgaaagtatctaacgcagaaacca 500

                                                                       
Query: 299 atgaaaggaaaagggtactagagtatgaaagaataaagtataagatcgggcaatcccaga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaaaggaaaagggtactagagtatgaaagaataaagtataagatcgggcaatcccaga 560

                                                                       
Query: 359 tgcctttgcttaggactgtgaaaggatttgaggtggagaacagtgatgtaatgagtgagg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctttgcttaggactgtgaaaggatttgaggtggagaacagtgatgtaatgagtgagg 620

                                                        
Query: 419 gcgtggtttcagggtagatatgtaatgattgagggcgaggttgca 463
           |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 gcgtggtttcagggtagatatgtaatgactgagggcgaggttgca 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 865
Length adjustment: 10
Effective length of query: 453
Effective length of database: 855
Effective search space:   387315
Effective search space used:   387315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)