BAC Information

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BAC

Clone NameMSMg01-298G09
Chromosome15 (Build37)
Map Location 100,078,143 - 100,078,681
singlet/doubletsinglet
Overlap geneAtf1
Upstream geneMcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b
Downstream gene4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298G09.T7 (MSMg01no298_g09.b1)MSMg01-298G09.TJ (MSMg01no298_g09.g1)
ACCAG425460AG425461
length729792
length of high quality
(start - end)
575 (35 - 609)---
definitionCHROMAT_FILE: MSMg01no298_g09.b1 PHD_FILE: MSMg01no298_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:04 2005CHROMAT_FILE: MSMg01no298_g09.g1 PHD_FILE: MSMg01no298_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGAGCCGCGGAATTCTTTAG
TTTCCCCCACACACAATTGTTGATTTGTTAAAACAAAAGGGTGATATCCT
CTGAAGCACCGTGTGTTAATTAATCAGGTTCCATTGTAAACTTGTGCTTT
GGAGCCCAGAGCAGGGAATGAAGGAACTGGGGAAGGCCCGTAGGCAGAGC
GCTAGGATGCAGCCCCTTTGCTGCGTTGTGTACTATGAGGGTCTCATCCT
ACAACACGCTCCCGATGAACATAGACTTTACACAGGCACAAAACCAATGG
AGCCAAACCTGTCAAATGGAACCAAATCAATCTTTCCTATTTAAAATGGC
ATTAAAGATGGCAGTTATTGCAGCCTAGGGATGGCCCAGTGGTTAAGATC
ACTTTTGCAGAGGACCTGCGTTTGTTTTTCAGTGCCCTTGTCGGGCAACT
CATAAGCACCAGCTCCAGGGCATGTAAGCCTCTTCCAGCCTCTGTGGGCA
CTGTACTCATGCACACACCCTAACACATGCACACAATCAAAACTAGAGAA
AACAAACCCTTTCAAAACTACACAAAGGTAACAACACACCTGTCCACTGT
TGATTCAATCAAAATTCCGAGTACCCTAGCTCCATATCGTCTTTAACTGA
CAGACTTCTGCGGCTGGGGTTTTTGCTACCTTTGTGCTGTTGGACTTTTC
TGCTATTCTACTTTCCTAGCGGGGCTGTC
NAAAAAGAAAANNNNNNNTTACCACCANAACACCAACNNNCNNNNNNCCA
ATGATAAGTGTAGGNNGGGAGGNCGCCGGTTCCCCACCCGCCAGGNGNAN
CNAGNGAATTACAAGCAGCAGAGACGNANNNNAAAACNGNAANNNGNAAG
NNAANCNNCAAAGAAAGAGCCCGANACNGNNAAGANNAAAAGGCNAAAGA
AAGAAANNAGGCNAAAGAAAGAAGCNNNAAAAACACAGGNNNAGGGGCAG
GAAAGAAGGCNNNGAGGCNAAGAGCAAGAANAGGCANAANAGAGACCCTT
TTNGCNAGACCCGGCACCCACAGNCAGGCGAAACAAGCAGCCCGAAACAC
CAGCACAAGGCGTTTTTTTTTTTTCAGACCNNCNAGGGCAGAGGCACACA
CCAANATTCGTACACACCCCANGNNNAAAAAANAGAACCNAAAGGGACAG
GGGAGAAGGCNCAGCGGNAAGGAGGACCGACACGCCCACCAGAGGAAACA
GGAAAGAGACACAGCAGAAAACAGGCAGGAGAAACACCAAAACCAGGGGA
GCCAGCACCAGNAANGAGCCACAGAGGGAACCAAAAACGCACAAGGAACA
CAGAACCAAACGCAAGCCAAACAACCACAGAGGCAAAAAGAAAACAAGCG
AAAAAAGAAGAGAAAAAAACCCCGAAAAAACCCCCCCCGACCCCGAGAGT
TTTTTTTTTTTTTAGGGGTTTGTTATGGGTTAAGACTAGCAACCTTTAAA
ATGAGGTGCCTGCATCCAGTTTTTTATAATTGCAAGGTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_g09.b1 MSMg01no298_g09.b1 CHROMAT_FILE:
MSMg01no298_g09.b1 PHD_FILE: MSMg01no298_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:04 2005
         (575 letters)



>mm_chr15_100078139_100079114
          Length = 976

 Score =  984 bits (509), Expect = 0.0
 Identities = 532/541 (98%), Gaps = 5/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttta--gtttcccccacacacaattgttgatttgttaaaacaaaagggtgatat 63
           ||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaattctttagggtt--ccccacacacaattgttgatttgttaaaacaaaagggtgatat 486

                                                                       
Query: 64  cctctgaagcaccgtgtgttaatta-atcaggttccattgtaaacttgtgctttggagcc 122
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 485 cctctgaagcaccgtgtgttaattacatcaggttccattgtaaacttgtgctttggagcc 426

                                                                       
Query: 123 cagagcagggaatgaaggaactggggaaggcccgtaggcagagcgctaggatgcagcccc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cagagcagggaatgaaggaactggggaaggcccgtaggcagagcgctaggatgcagcccc 366

                                                                       
Query: 183 tttgctgcgttgtgtactatgagggtctcatcctacaacacgctcccgatgaacatagac 242
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttgctatgttgtgtactatgagggtctcatcctacaacacgctcccgatgaacatagac 306

                                                                       
Query: 243 tttacacaggcacaaaaccaatggagccaaacctgtcaaatggaaccaaatcaatctttc 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 305 tttacacaggcacaaaaccaatggagccaaaccagtcaaatggaaccaaatcaatctttc 246

                                                                       
Query: 303 ctatttaaaatggcattaaagatggcagttattgcagcctagggatggcccagtggttaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctatttaaaatggcattaaagatggcagttattgcagcctagggatggcccagtggttaa 186

                                                                       
Query: 363 gatcacttttgcagaggacctgcgtttgtttttcagtgcccttgtcgggcaactcataag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gatcacttttgcagaggacctgcgtttgtttttcagtgcccttgtcgggcaactcataag 126

                                                                       
Query: 423 caccagctccagggcatgtaagcctcttccagcctctgtgggcactgtactcatgcacac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 caccagctccagggcatgtaagcctcttccagcctctgtgggcactgtactcatgcacac 66

                                                                       
Query: 483 accctaacacatgcacacaatcaaaactagagaaaacaaaccctttcaaaactacacaaa 542
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 65  accctaacacatgcacacaatcaaaactatagaaaacaaaccctttcaaaactacacaaa 6

            
Query: 543 g 543
           |
Sbjct: 5   g 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space:   545790
Effective search space used:   545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)