BAC Information

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BAC

Clone NameMSMg01-300F19
Chromosome15 (Build37)
Map Location 72,328,581 - 72,329,156
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300F19.T7 (MSMg01no300_f19.b1)MSMg01-300F19.TJ (MSMg01no300_f19.g1)
ACCAG426871AG426872
length737741
length of high quality
(start - end)
693 (45 - 737)657 (76 - 732)
definitionCHROMAT_FILE: MSMg01no300_f19.b1 PHD_FILE: MSMg01no300_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005CHROMAT_FILE: MSMg01no300_f19.g1 PHD_FILE: MSMg01no300_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATATT
CTGAAGTCCACCTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTATCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTTACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTA
TCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATAGTTCAGAATAGTAACAAGT
ACAAAGCAGATTAGACTCCACTTACCACATGTCCTGTCCTTTCTACAAAA
GTCTTTATGTTGGCTTTATACTTATCAAGTATCCACCTAGGCTTATTCTA
TGTCATATATTAAAAATTAAATTTGAGAAATACTTATTAAAAGTCCATTA
TTTTCTGGACATGTAAAAGAATATAGAAGCCAGATTCTGCAGGAAGAGTA
GAATTCAGTGTGATTGCTACTGATGTGCACCTCCTGCCTGGGCTTAGTGA
GGAGGGAAGGGCGGATGCTCCTTTCTTGCTCAGGAGAGCAGTTACGTTCT
TTGCTTTCATTGATTAACATGTTAAAGATAACCTCAGCATGTTCACTGCC
ATCACACTGAGGAGCGAAGACACAGCAACTTCCTGTGCAATTAATTTGAC
CAAAAGTGAGCCCAACTTTGAACCCTCCACTTCCATTTGTCTGTCGCTTG
TGGTTGCAGTCCTGTCTGTTGTCTCGTGACTAAAATTGCCCATAATTCTA
CTGTTAGAATAAAGTCCCCTCGGAGCTTTGCCCCATAATTTTCTGACACA
TTTATAAAGTACCCTCTCTCTGCACAGATAAAAGTGACAATTTAACCTAG
TGCAAACCTGACTAAGAGGGAAACGTAGAAGCCAGACAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_f19.g1 MSMg01no300_f19.g1 CHROMAT_FILE:
MSMg01no300_f19.g1 PHD_FILE: MSMg01no300_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:29 2005
         (657 letters)



>mm_chr15_72328581_72329637
          Length = 1057

 Score = 1044 bits (540), Expect = 0.0
 Identities = 567/576 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatagttcagaatagtaacaagtacaaagcagattagactccacttaccacatgtcct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 576 caaatagttcagaatagtaacgagtacaaagcagattagactccacttagcacatgtcct 517

                                                                       
Query: 61  gtcctttctacaaaagtctttatgttggctttatacttatcaagtatccacctaggctta 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtcctttctacaaaagtctttatattggctttatacttatcaagtatccacctaggctta 457

                                                                       
Query: 121 ttctatgtcatatattaaaaattaaatttgagaaatacttattaaaagtccattattttc 180
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 456 ttctatgtcatatattagaaattaaatttgagaaatacttaataaaagtccattattttc 397

                                                                       
Query: 181 tggacatgtaaaagaatatagaagccagattctgcaggaagagtagaattcagtgtgatt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tggacacgtaaaagaatatagaagccagattctgcaggaagagtagaattcagtgtgatt 337

                                                                       
Query: 241 gctactgatgtgcacctcctgcctgggcttagtgaggagggaagggcggatgctcctttc 300
           |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 336 gctactgatgtgcatctcctgcctgggcttagtgaggagggaagggcagaggctcctttc 277

                                                                       
Query: 301 ttgctcaggagagcagttacgttctttgctttcattgattaacatgttaaagataacctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttgctcaggagagcagttacgttctttgctttcattgattaacatgttaaagataacctc 217

                                                                       
Query: 361 agcatgttcactgccatcacactgaggagcgaagacacagcaacttcctgtgcaattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agcatgttcactgccatcacactgaggagcgaagacacagcaacttcctgtgcaattaat 157

                                                                       
Query: 421 ttgaccaaaagtgagcccaactttgaaccctccacttccatttgtctgtcgcttgtggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ttgaccaaaagtgagcccaactttgaaccctccacttccatttgtctgtcgcttgtggtt 97

                                                                       
Query: 481 gcagtcctgtctgttgtctcgtgactaaaattgcccataattctactgttagaataaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  gcagtcctgtctgttgtctcgtgactaaaattgcccataattctactgttagaataaagt 37

                                               
Query: 541 cccctcggagctttgccccataattttctgacacat 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  cccctcggagctttgccccataattttctgacacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)