BAC Information

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BAC

Clone NameMSMg01-300L18
Chromosome15 (Build37)
Map Location 8,202,849 - 8,203,169
singlet/doubletsinglet
Overlap geneLOC100039599
Upstream geneEgflam, Gdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik
Downstream geneNipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300L18.T7 (MSMg01no300_l18.b1)MSMg01-300L18.TJ (MSMg01no300_l18.g1)
ACCAG427143AG427144
length726723
length of high quality
(start - end)
324 (47 - 370)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no300_l18.b1 PHD_FILE: MSMg01no300_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:57 2005CHROMAT_FILE: MSMg01no300_l18.g1 PHD_FILE: MSMg01no300_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:57 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGGCCTTAAGTAGGAGTCTCCATCCAGTCTGGCCTCTTGTGAA
AGCGTAGTGTCATTTCCTCACTGCCATGGTCATTTCTGACCACAAAATAG
CTTGGAGTATTCTCTTCTGCAACTTACATTAAAAAAAAAAAAGTTAATAG
AAAATAATGACTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTCAT
GAAACTGCAAAGCTTCTGCAAGGCAAAAGATACTGTCAATAAGACAAAAA
GGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG
GGACTAATATCCAATATATATTAAGAACTGAACAACGTGGACTCCAGAAA
ATCAAATAACCCCATTAAAAAATGGGGCTCAGAATTGAACAAAGAATTCT
CACCCGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATTATCAGGGAAATGCAAATCAAAAACAGAGAAACCCTGTCTTG
AAAAAAAAAGAAAGAAAGAAAAGAAATCGCACTTGCCAGGCATGCTGGCA
GATACCTTTAATCTCAGTGCTTGCAAGGCAGGTGGATTTCTGTGAGTTCA
AGGCCAGCCTGGTTTATGCTGGCCCCAGACACCCAAGGCTACACAGAGAA
ACACTGTCTCAAAACAAAATTTGTTT
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCTGTGGAGTAGGCTTCAG
ATCCAATCTGAAAGCAGTTGGTGTCCCCCAACAGTTCTGCCACTATTGGA
TTAATGGGCACATCTTTACTGGCAGGTCACTGTTAGCATGCACAGACCAT
TCCTGGGTAAGTCCATTGATAGCTTTTCTCTCATAGCAGCCTTACACGAA
AAGCTAGCCAACAAGGAGGAAGCTACTAGCTCAAGTCCAGCTTGTTGTCT
CTATGTTCTGCAGCCAGGGTATGTGGTGTCTTTAGCAATAATCTTGCCAT
TTAGTTTGGCAATGTTTNGTANCGTTCCCACCCCCCCCGTTACCTCCTTG
ACCATAATAGCTCATGCAGAGGTATCCTAAAAAAAAAAATAGGATTTTTG
TTAATAACATGGCTTCTGGGAGCAGTTTTATCTGTGTACTCATGAAGACT
CTGTTTATAAAGACTGCCAACACCACCTCCTCTAGGAAATTTTGTCTGGT
TTCTTTCTAACCTTTCTCAGAAATAATTTTTCCTTCCTCTGATTTTATCT
GAATCTTTATGAGTATTGCAAATTTCTACTTTGTTATGTAATTGCATGTG
CCCCTTTAAAAAAATAAGTTTATAGTCTATTCTAGAAATTCTCCAAGACT
TTCCCAGGGTATATAACTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_l18.b1 MSMg01no300_l18.b1 CHROMAT_FILE:
MSMg01no300_l18.b1 PHD_FILE: MSMg01no300_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:57 2005
         (324 letters)



>mm_chr15_8202646_8203369
          Length = 724

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagggccttaagtaggagtctccatccagtctggcctcttgtgaaagcgtagtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagggccttaagtaggagtctccatccagtctggcctcttgtgaaagcgtagtg 263

                                                                       
Query: 64  tcatttcctcactgccatggtcatttctgaccacaaaatagcttggagtattctcttctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcatttcctcactgccatggtcatttctgaccacaaaatagcttggagtattctcttctg 323

                                                                       
Query: 124 caacttacattaaaaaaaaaaaagttaatagaaaataatgacttgtgctgtaagatcgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 caacttacattaaaaaaaaaaaagttaatagaaaataatgacttgtgctataagatcgag 383

                                                                       
Query: 184 aatcgacaaatgggacctcatgaaactgcaaagcttctgcaaggcaaaagatactgtcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatcgacaaatgggacctcatgaaactgcaaagcttctgcaaggcaaaagatactgtcaa 443

                                                                       
Query: 244 taagacaaaaaggccaccaacagattgggaaaggatctttacctatcctaaatcagatag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taagacaaaaaggccaccaacagattgggaaaggatctttacctatcctaaatcagatag 503

                                
Query: 304 gggactaatatccaatatata 324
           |||||||||||||||||||||
Sbjct: 504 gggactaatatccaatatata 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)