BAC Information

Click to search

BAC

Clone NameMSMg01-300M17
Chromosome15 (Build37)
Map Location 58,492,323 - 58,492,974
singlet/doubletsinglet
Overlap geneEG631797
Upstream geneZhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e
Downstream geneTmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300M17.T7 (MSMg01no300_m17.b1)MSMg01-300M17.TJ (MSMg01no300_m17.g1)
ACCAG427183AG427184
length753749
length of high quality
(start - end)		625 (41 - 665)99 (201 - 299)
definitionCHROMAT_FILE: MSMg01no300_m17.b1 PHD_FILE: MSMg01no300_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:01 2005CHROMAT_FILE: MSMg01no300_m17.g1 PHD_FILE: MSMg01no300_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACCTGTTCACAGCAGAAGAAGCCGAGAAAAACCCTGTTGGGAAAGCCCG
GAAGGAGCCCGAGCCCTTGGCCAAGCCCAAGTGAGTATGGCTGGCCTGCA
GTTGGAAACATGGGGCCCAGGCTTTCCTGTTCCTGCACACAGAACTCAGG
AGTCGGGGGTCAGGCGATAGTGCCGTCCAACCTGTGTAGTGTACGGTTTC
TATAACTGAAAAGTGCCCCAAAGATCACAGACCGCAGATGGAGCAAGTCC
TTCTGTAACATGCTCTGGAGATAGATAGATAGATAGATAGATTGATTGAT
TGATTGATTGATTGATTGATTGATTGATGATTGACTTAACATTTTCACAC
CTTTATTTGAAAAGTTTTCCTTCAATGTCATAGTTCTAATTAATATTTTT
GAGGAGGGCATAGTATTCCATGGGCTTAGTGCCCATTATCAACTTGGTCA
CCACCCACAATCAGATAATCAACTTAATTTTGTCATTTTCTGTTTTGCTT
TGTTTTGCTTTTTCGATATGATCAGAACATTTTCTTTTTCATGCGTCATT
ACTCTTTAAAAATAGCCAGAATCAGAATTATTTTTAATATGATGGTACTT
TATTGTACCTGATTCTTGGTTACATAGCCATCATAAACTGAATGTTCATG
AAATATGCATATAAAATGCCTTTTGGAATCATGCACATTTGTCCTATCGC
CCC

AGTGGGAGGCCTGGGGGCCGCCTTTTTCCGACCTGGAGGNGAACNANAGA
AGTAACACGACGGGCCACCNGAGGAAACGGAAGGGCCGAGAAGCCCCGGA
AAAATTTTNACCAACCACAAGCAGCAGGGAAAGGCAAANCAAAACAACCC
GGAGANNCCACCGCACAGCAGNCAGAACGGCNAAGAAAAAAAACCNAGGN
AGCAACAGAAGCGGGCGAGGANGGGGGGAAAGAGGAACATCTTCTCCATT
GTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGGGG
NTCCTCTTTTTTTTTTACANAGNACNACCAGAGGANCCCGCAANAACTTT
TTTTTTCCCCCCCCCCCCGATGTTCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAAAAAAAAAAATTATAATAGGCGGAAGCTGGAAAGAAC
CTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGCACATTTAC
ACAATGGAGTACTACTCAGATGTTAAAATGAATGAATTTATGAAATTCCT
AGGCAAATGGATGTACCTGGAGTGCATCATCCTGAGCGAGGTAACCCAAT
CCCCAAAGAACTCATATGATATGTACTCACTGACAAGAGGATATTTTTTT
TTATTCTTAGAATACCCAAGACACAATGATCCAATTTGCATAACACACGA
TACTCCAGAAGAACGAAGAACCAAGTGTGGACACTTAGCCCCTTCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_m17.b1 MSMg01no300_m17.b1 CHROMAT_FILE:
MSMg01no300_m17.b1 PHD_FILE: MSMg01no300_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:01 2005
         (625 letters)



>mm_chr15_58492149_58493174
          Length = 1026

 Score = 1048 bits (542), Expect = 0.0
 Identities = 611/654 (93%), Gaps = 35/654 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacctgttcacagcagaagaagccgagaaaaaccctgttgggaaagcccggaag 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattccacctggtcacagcagaagaagccgagaaaaaccctgttgggaaagcccggaag 234

                                                                       
Query: 65  gagcccgagcccttggccaagcccaagtgagtatggctggcctgcagttggaaacatggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gagcccgagcccttggccaagcccaagtgagtatggctggcctgcagttggaaacatggg 294

                                                                       
Query: 125 gcccaggctttcctgttcctgcacacagaactcaggagtcgggggtcaggcgatagtgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gcccaggctttcctgttcctgcacacagaactcaggagtcgggggtcaggcgatagtgcc 354

                                                                       
Query: 185 gtccaacctgtgtagtgtacggtttctataactgaaaagtgccccaaagatcacagaccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtccaacctgtgtagtgtacggtttctataactgaaaagtgccccaaagatcacagaccg 414

                                                                       
Query: 245 cagatggagcaagtccttctgtaacatgctctggagatagatagatagatagatagat-- 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 415 cagatggagcaagtccttctgtaacatgctctggagatagatagatagatagatagatag 474

                                                                       
Query: 303 -t-------------------------gattgattgattgattgattgattgattgattg 336
            |                         |||||| ||||||||||||||||||||||||||
Sbjct: 475 atagatagatagatagatagatagatagattgactgattgattgattgattgattgattg 534

                                                                       
Query: 337 at----gattgacttaacattttcacacctttatttgaaaagttttccttcaatgtcata 392
           ||    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 atagatgattgac--aacattttcacacctttttttgaaaagttttccttcaatgtcata 592

                                                                       
Query: 393 gttctaattaatatttttgaggagggcatagtattccatgggcttagtgcccattatcaa 452
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 593 gttctagttaatatttttgaggagggcataatattccatgggcttagtgcccattatcaa 652

                                                                       
Query: 453 cttggtcaccacccacaatcagataatcaacttaattttgtcattttctgttttgctttg 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cttggtcaccacccacaatcagataatcaacttaattttgtcattttctgttttgctttg 712

                                                                       
Query: 513 ttttgctttttcgatatgatcagaacattttctttttcatgcgtcattactctttaaaaa 572
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttttgttttttcgatatgatcagaacattttctttttcatgcgtcattactctttaaaaa 772

                                                                 
Query: 573 tagccagaatcagaattatttttaata-tgatggtactttattgtacctgattc 625
           ||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 773 tagccagaatcagaattatttttaaaaatgatggaactttattgtacctgattc 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space:   624840
Effective search space used:   624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |