Query= MSMg01no301_m08.b1 MSMg01no301_m08.b1 CHROMAT_FILE:
MSMg01no301_m08.b1 PHD_FILE: MSMg01no301_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:15 2005
(600 letters)
>mm_chr15_71264983_71265990
Length = 1008
Score = 1091 bits (564), Expect = 0.0
Identities = 591/604 (97%), Gaps = 8/604 (1%)
Strand = Plus / Minus
Query: 5 gaattcttcatcttc-tcccatgatagcatgcaatgtttggctgcttctgaagcctcagt 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaattcttcatcttcaccccatgatagcatgcaatgtttggctgcttctgaagcctcagt 749
Query: 64 tctcccaccagccg-------ccccccccacacacactccgcatgttttctcctgttctt 116
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tctcccaccagccgcccctccccccccccacacacactccgcatgttttctcctgttctt 689
Query: 117 catgcagtcttctttgtaattgtacccgagtctacaggtccctgaggcctctgaccatgc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 catgcagtcttctttgtaattgtacccgagtctacaggtccctgaggcctctgaccatgc 629
Query: 177 attccctcttcctagtgttgtgtccctggttagctgaggacttcctttctatctttcacc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 attccctcttcctagtgttgtgtccctggttagctgaggacttcctttctatctttcacc 569
Query: 237 tggatatccgtacaaagtcagaagctcaccaaaacctttcgtatgcacctgttctcaaat 296
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 568 tggatatccgtacaaagtcagaagctcaccaaaacctttcgtaggcacctgttctcaaat 509
Query: 297 ttcatggtttcctacccacattctggaaagtctccacctcctacatttttttacctcagc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttcatggtttcctacccacattctggaaagtctccacctcctacatttttttacctcagc 449
Query: 357 atttaccatggtacagcctattacctgtttcatccattcatcttacagatcctccctcct 416
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atttaccatggtacagtttattacctgtttcatccattcatcttacagatcctccctcct 389
Query: 417 tatgacactgctcccttcatcaaggcacagggtctgtttgaggactgctttgactcttgc 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacgacactgctcccttcatcaaggcacagggtctgtttgaggactgctttgactcttgc 329
Query: 477 attcctgagtcaggctgtgcaataggcccctaatgaaaatggggtcagcagatgagtgag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attcctgagtcaggctgtgcaataggcccctaatgaaaatggggtcagcagatgagtgag 269
Query: 537 tttgaatcctatacatatttgaggcttaatgtattctgaataggaaatccccaaactcat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttgaatcctatacatatttgaggcttaatgtattctgaataggaaatccccaaactcat 209
Query: 597 caga 600
||||
Sbjct: 208 caga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1008
Length adjustment: 10
Effective length of query: 590
Effective length of database: 998
Effective search space: 588820
Effective search space used: 588820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_m08.g1 MSMg01no301_m08.g1 CHROMAT_FILE:
MSMg01no301_m08.g1 PHD_FILE: MSMg01no301_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:15 2005
(290 letters)
>mm_chr15_71082903_71083592
Length = 690
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Plus
Query: 1 ttttcaaaaccaggaatttttgactaaggaaaagtcagaggacaatctagggttggacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcaaaaccaggaatttttgactaaggaaaagtcagaggacaatctagggttggacaa 260
Query: 61 tctaggcagagggaactgaaaacccctaatctggaatgggatggtagagcttgtccgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaggcagagggaactgaaaacccctaatctggaatgggatggtagagcttgtccgtgg 320
Query: 121 ggaagaaacaacctcagagtatgtaggagatttcataagggagaggggattctagggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagaaacaacctcagagtatgtaggagatttcataagggagaggggattctagggaaa 380
Query: 181 gcatacgcagtgcaccaccagagtcatctggcaaagcatcacagggaaccactgcagagg 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatatgcagtgcaccaccagagtcatctggcaaagcatcacagggaaccactgcagagg 440
Query: 241 aagcccctccagccagcatttcgaaggggaagaacatcgcagtaagggcc 290
|||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 441 aagcccctccagccagcatttcgaaggggaagaacagcacagtaagggcc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
