BAC Information

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BAC

Clone NameMSMg01-301P21
Chromosome15 (Build37)
Map Location 70,864,546 - 70,864,859
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301P21.T7 (MSMg01no301_p21.b1)MSMg01-301P21.TJ (MSMg01no301_p21.g1)
ACCAG428020AG428021
length752753
length of high quality
(start - end)		317 (45 - 361)601 (74 - 674)
definitionCHROMAT_FILE: MSMg01no301_p21.b1 PHD_FILE: MSMg01no301_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:31 2005CHROMAT_FILE: MSMg01no301_p21.g1 PHD_FILE: MSMg01no301_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGATCTAACGCTTATCGCTGTGCTTTAGATGCGCTCTTGCCTTCA
ATGTCCTTTTCTAAATGAAGTGATCTGAACTAGACTGGAGAGCTTTTGTG
TTAAGATAAGGAGTTGAATTTTGTCCTTCTAGTTGATTGAGAGGCATCGC
AGAGGAGCACAATGAGCAAGCTGGCATTGTAGAAGGTCACTTTCAGACTA
TAATGGACAAAGGCATGGGAGGGATCCAGCTGGTGGGAGAATGATGATAC
TAGCTAAAGTCTGATGATAATTGAGACACTGTGAGAACATAAAAAAAATA
ATGGGGTTGGGTATTTTAATATACCCCCGCCACTCCTAGCTACTTGGGAG
GTCAAGACAGTGGCATTGCACGTTTGAGGATAGATTGAGCTATGTAACGG
GATCTAGTTTCAAAAAATGGATGCCTGTATACATTCATTCATATATGATA
TATGAATACACACACACACACACACACACACACACACACACACACAATGT
GGTAATGAAGATTTGTTTCCCTATTTAAATGGGCCCTAATAGGGATTTCA
TTTGATCAGAGAGGTTTATAATTCCAAAGCACTTGGAGTTTCCATTTATG
AAAATTCACCCAGATTGTGCATGATACTCTATGAGAACTCTCAGCCTTAG
TAGCTCCGTAATATTTCTTCATTCTGATATTTCTCAACCATGTGGATTTT
AA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTATTCTTTTAAACTGGTAAAATAG
GATATAGCATTTTTGACAGTTATTATTTTAATATTATAAATTAATTTTGA
AAGTATAGATATTTTCCCAATATTAATCTTGTCTCTCTGGTAACAAGAAA
TATTTTTCCATTGACTATTATCTTCTTTGATTTCCTTCTTAATTATCATG
AAATTTTTACTGCAGAGGTTTTGTCATGTATTTGGTTAAATATATTCCTA
AATGTTTAAGTTGTTGGGGCTGTTTGGAATGGATTTTTCCCTAATGTCTT
TCTTAGAGCATAGAATGTTAGTACAAATGAAAGCTACTTTTAAAAAATAT
TAATTTTGTATCCTTCATTTTTTCTGTGGTTTTTAGGTCCATATGTTTTT
TTTTTGTTTGTTTGTTTGTTTGTTTTTTTAGACTCAATGGGACAACATTT
TAAATAATGAATTGTGTAATATGCCTATAAGGATAGTTTTACTTCTTACT
CTATCGTTATCCCTTTTCTATCTTTCTCTTTTCTAGTTGATGCAGCTAAG
ACTTTGAGTACTGCATTGAGCAAGAGAAGGGGAGCACACACTACAACTGA
TCCTTTCTTCTAGCACATCTTGTACAAATCAAGACTTTAGTTATACATTT
CCAGGAATGGGGTGTTGTTGAATGATTGAACAACAACATTTTTATACCCA
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_p21.b1 MSMg01no301_p21.b1 CHROMAT_FILE:
MSMg01no301_p21.b1 PHD_FILE: MSMg01no301_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:31 2005
         (317 letters)



>mm_chr15_70864343_70865059
          Length = 717

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagatctaacgcttatcgctgtgctttagatgcgctcttgccttcaatgtcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagatctaacgcttatcgctgtgctttagatgcgctcttgccttcaatgtcct 263

                                                                       
Query: 64  tttctaaatgaagtgatctgaactagactggagagcttttgtgttaagataaggagttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttctaaatgaagtgatctgaactagactggagagcttttgtgttaagataaggagttga 323

                                                                       
Query: 124 attttgtccttctagttgattgagaggcatcgcagaggagcacaatgagcaagctggcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attttgtccttctagttgattgagaggcatcgcagaggagcacaatgagcaagctggcat 383

                                                                       
Query: 184 tgtagaaggtcactttcagactataatggacaaaggcatgggagggatccagctggtggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtagaaggtcactttcagactataatggacaaaggcatgggagggatccagctggtggg 443

                                                                       
Query: 244 agaatgatgatactagctaaagtctgatgataattgagacactgtgagaacataaaaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaatgatgatactagctaaagtctgatgataattgagacactgtgagaacataaaaaaa 503

                         
Query: 304 ataatggggttggg 317
           ||||||||||||||
Sbjct: 504 ataatggggttggg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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