BAC Information

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BAC

Clone NameMSMg01-303C19
Chromosome15 (Build37)
Map Location 56,410,319 - 56,440,099
singlet/doubletdoublet
Overlap genenone
Upstream geneMtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303C19.T7 (MSMg01no303_c19.b1)MSMg01-303C19.TJ (MSMg01no303_c19.g1)
ACCAG428843AG428844
length756762
length of high quality
(start - end)		716 (38 - 753)687 (69 - 755)
definitionCHROMAT_FILE: MSMg01no303_c19.b1 PHD_FILE: MSMg01no303_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:01 2005CHROMAT_FILE: MSMg01no303_c19.g1 PHD_FILE: MSMg01no303_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,410,319 - 56,411,030)(56,439,413 - 56,440,099)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
GACTGACACTGCAGTTGCTGCTGTTTAAAGTCAATGGGTGGCAGGGCCTG
ATTGCTCTGTTGAGTTGCTTAAATTCGTTTAAGAGAATAGATACACTCTT
AAATTAGTAAACTATGCCAATGCCCTCAAAAAATGGTCTACAAAAATGAC
TCACTCCTGTTACACTGTCAGTTGGAGCACATTAGTCATCTGCAGGTCTC
TTCTCATCCTTCAGTTGTTGGAGTGACTGTCATTGAGAGATACTCAAGGT
TGACTTCTAAGAGAGGGAGATAGAGTTGTTACTCTCCTATGTTATGTGGG
TACTCCCAAATCCCAAGGGCATTTCTATTACATTCTCTTAATCAGTCACA
AGGGTTGAGAAGAAGATTTTATCTCTTGCACTAATTGTGACAATATTTTA
TAGGCTGTAATGTATTGTCTAGTTTGTCTATCACATGTCTATCTACCTAT
TACCAACCTACCTGCTTATCTACTTTTCCTATTAAAATGTAGACCTTATG
AGGATGGTTTTAACTGTTCTTTATTATGTCACTGGTGAATGGAACAGTAG
TTAGTACATAGTTACTCAATTAAAAAGTGAATGGAGGAATAGCTTTACTT
GATCTATGCAACCTTAATGAAAAAATAATAAGGAAGTTTTAACTTGCAAA
GACTGAGAGAAGGCTCTTTTATAAGTGAAGCAAAGCTACAGGAGTGCTGG
CAGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAACAACTAGGTCTACACATTGCTGGTGGTT
GATCATGTTTGAAGGAGATATTCAAGGATGGGGAAGTCGCAGGACTATTT
TATCCTAATTCGGGTGAACCAATAGAAGGAAAATGCTAAGCACACAGCAT
CAAAGAAGAAATGGGTCTGGTTTGAAAGGGCATGGGGCAACTGCACTTAG
TCTTCAGGATTATAGAAAGAAGTACATGTTTGCCAGTAAGCCTTGTGATT
AAAGTGGTCTTTCTAGCATCCCTATTATAATTCCTAATCTCCCAGGCCCG
TCAGAGGTGTGGGGCGGTTGAGTGCTTGTGTTCTGTGTGTAGGCAGCAGG
ATCAGCTATGAGAGGGTTTCTCAGAGCTTGCTGTTTTAATCTCTCAAAGC
ACTATGGTGGTTTCCACTCTGTTGCTCATCCTAGATCTTATAGGGAAAAT
GAAGTTCTTGACATTTTCAAGAGATTGAAAAAAATCAAAATTATGTTTAA
TTTAGAATTAAGATGACATTGGCTGGTGAATAAATTAGTTCCTATTATTT
ATAGCTATAGCTTGAATTTCCTCTAAAGCTTTGTGTGTTAAGGATTTGCT
CCCCAGAATATCACTGGGAGACTCTTTGTACCTTTAGAAATCAGATCTGT
GTGAGAAGCTGTTATGTCTTTTAGGGTATTTAGACAGGACTTATGAGATT
CTGGCCCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_c19.b1 MSMg01no303_c19.b1 CHROMAT_FILE:
MSMg01no303_c19.b1 PHD_FILE: MSMg01no303_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:01 2005
         (716 letters)



>mm_chr15_56410115_56411230
          Length = 1116

 Score = 1353 bits (700), Expect = 0.0
 Identities = 709/712 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgactgacactgcagttgctgctgtttaaagtcaatgggtggcagggcctga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgactgaaactgcagttgctgctgtttaaagtcaatgggtggcagggcctga 264

                                                                       
Query: 65  ttgctctgttgagttgcttaaattcgtttaagagaatagatacactcttaaattagtaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgctctgttgagttgcttaaattcgtttaagagaatagatacactcttaaattagtaaa 324

                                                                       
Query: 125 ctatgccaatgccctcaaaaaatggtctacaaaaatgactcactcctgttacactgtcag 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 ctatgccaatgccctcaaaaaatggtctacaaaaatgacttactcctgttacactgtcag 384

                                                                       
Query: 185 ttggagcacattagtcatctgcaggtctcttctcatccttcagttgttggagtgactgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggagcacattagtcatctgcaggtctcttctcatccttcagttgttggagtgactgtc 444

                                                                       
Query: 245 attgagagatactcaaggttgacttctaagagagggagatagagttgttactctcctatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attgagagatactcaaggttgacttctaagagagggagatagagttgttactctcctatg 504

                                                                       
Query: 305 ttatgtgggtactcccaaatcccaagggcatttctattacattctcttaatcagtcacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatgtgggtactcccaaatcccaagggcatttctattacattctcttaatcagtcacaa 564

                                                                       
Query: 365 gggttgagaagaagattttatctcttgcactaattgtgacaatattttataggctgtaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggttgagaagaagattttatctcttgcactaattgtgacaatattttataggctgtaat 624

                                                                       
Query: 425 gtattgtctagtttgtctatcacatgtctatctacctattaccaacctacctgcttatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtattgtctagtttgtctatcacatgtctatctacctattaccaacctacctgcttatct 684

                                                                       
Query: 485 acttttcctattaaaatgtagaccttatgaggatggttttaactgttctttattatgtca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttttcctattaaaatgtagaccttatgaggatggttttaactgttctttattatgtca 744

                                                                       
Query: 545 ctggtgaatggaacagtagttagtacatagttactcaattaaaaagtgaatggaggaata 604
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 745 ctggtgaatggaacagtagttagtacatagttactcaattaaaaggtgaatggaggaata 804

                                                                       
Query: 605 gctttacttgatctatgcaaccttaatgaaaaaataataaggaagttttaacttgcaaag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gctttacttgatctatgcaaccttaatgaaaaaataataaggaagttttaacttgcaaag 864

                                                               
Query: 665 actgagagaaggctcttttataagtgaagcaaagctacaggagtgctggcag 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 actgagagaaggctcttttataagtgaagcaaagctacaggagtgctggcag 916


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space:   780836
Effective search space used:   780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no303_c19.g1 MSMg01no303_c19.g1 CHROMAT_FILE:
MSMg01no303_c19.g1 PHD_FILE: MSMg01no303_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:01 2005
         (687 letters)



>mm_chr15_56439213_56440299
          Length = 1087

 Score = 1274 bits (659), Expect = 0.0
 Identities = 680/687 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacaactaggtctacacattgctggtggttgatcatgtttgaaggagatattcaagga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 887 aaaacaactaggtctacacattgctggtggttgatcatgtttgaaggagatactcaagga 828

                                                                       
Query: 61  tggggaagtcgcaggactattttatcctaattcgggtgaaccaatagaaggaaaatgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tggggaagtcgcaggactattttatcctaattcgggtgaaccaatagaaggaaaatgcta 768

                                                                       
Query: 121 agcacacagcatcaaagaagaaatgggtctggtttgaaagggcatggggcaactgcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 agcacacagcatcaaagaagaaatgggtctggtttgaaagggcatggggcaactgcactt 708

                                                                       
Query: 181 agtcttcaggattatagaaagaagtacatgtttgccagtaagccttgtgattaaagtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agtcttcaggattatagaaagaagtacatgtttgccagtaagccttgtgattaaagtggt 648

                                                                       
Query: 241 ctttctagcatccctattataattcctaatctcccaggcccgtcagaggtgtggggcggt 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ctttctagcatccctataataattcctaatctcccaggcccgtcagaggtgtggggcggt 588

                                                                       
Query: 301 tgagtgcttgtgttctgtgtgtaggcagcaggatcagctatgagagggtttctcagagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgagtgcttgtgttctgtgtgtaggcagcaggatcagctatgagagggtttctcagagct 528

                                                                       
Query: 361 tgctgttttaatctctcaaagcactatggtggtttccactctgttgctcatcctagatct 420
           |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 527 tgctgttttaatttctcaaagcactatggtagtttccactctgttgctcatcctagatct 468

                                                                       
Query: 421 tatagggaaaatgaagttcttgacattttcaagagattgaaaaaaatcaaaattatgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tatagggaaaatgaagttcttgacattttcaagagattgaaaaaaatcaaaattatgttt 408

                                                                       
Query: 481 aatttagaattaagatgacattggctggtgaataaattagttcctattatttatagctat 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aatttagaattaaggtgacattggctggtgaataaattagttcctattatttatagctat 348

                                                                       
Query: 541 agcttgaatttcctctaaagctttgtgtgttaaggatttgctccccagaatatcactggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agcttgaatttcctctaaagctttgtgtgttaaggatttgctccccagaatatcactggg 288

                                                                       
Query: 601 agactctttgtacctttagaaatcagatctgtgtgagaagctgttatgtcttttagggta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agactctttgtacctttagaaatcagatctgtgtgagaagctgttatgtcttttagggta 228

                                      
Query: 661 tttagacaggacttatgagattctggc 687
           ||| ||||||||||||| |||||||||
Sbjct: 227 tttggacaggacttatgggattctggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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