BAC Information

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BAC

Clone NameMSMg01-303I08
Chromosome15 (Build37)
Map Location 76,680,417 - 76,680,651
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e
Downstream geneZfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303I08.T7 (MSMg01no303_i08.b1)MSMg01-303I08.TJ (MSMg01no303_i08.g1)
ACCAG429092AG429093
length733725
length of high quality
(start - end)		---238 (127 - 364)
definitionCHROMAT_FILE: MSMg01no303_i08.b1 PHD_FILE: MSMg01no303_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:27 2005CHROMAT_FILE: MSMg01no303_i08.g1 PHD_FILE: MSMg01no303_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTCCTAATTCGGACCGCCGNGGAANNAG
NNAATTACGGGACGGGGAGGGGGAGGNAAAGANCNAAGAGAGGAGGAGAA
GNGCTTTGCCCCCAAGAAGGAACAAAGAGCACAGGGGAGAGAGGAAACCA
GGGCAGGACGGGGGAGGGGGACACCCAGAGGGGAGGGAGCAGCACAAAAA
AGAGGAANCAGCCGGCGCGCGGNGCAGGTTTTTAACCCAGCACTTGGGAG
ACAGAGGCATGTGGATTTCTGAGACCGAGGCCAGCCGGGCCTATTTTTTC
TATTTTTAGACAAACCCAGCCACAAAAAACAACAACAAATTTTTTTCCTC
CCCCCCCCAAGAAATAAGGAAGTGAGCTCACTGGCAATCATTAAAGCCGT
CGCTGCAATTTAGGAATTGAATATGCGCATGAATTACTCTAACTCCCTCA
CATCCCATGTCAGTGACCTATCGAGCTCATTCATAGTTATCCATTTACCC
TCTCCGCCATCCCAGTTGCCGTCCTTCGCCTCTTCCTTCCTGTCCCATAC
TCGCTATACGACCATAGGTCTCTCCCCATATAATACATCCATCGTACATT
TTTAATTCCCCTATTTTTTCACCTATACAGAGAACTTTTTCCTTTTTATT
CTTTTTTTTAACACGCGTAAACCTATTCCTTCCTTATACTTTACTTCTCC
CTACCTTCAACTACATAAACCTACACAAATCCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCCTCACCTTGGTTACGACCAAGG
AATTCCCCTGATCAAAATTAACCCCGATTTCTTCCTCCATAGGAACTGTC
ATTAAAGGCTCTCATGAGGTGTCAGTGAAAAATAGACCCTTTGATTCCCT
TCCCCAAATTGTCATTAAAATGTATGAGGCATTCCTTCTCAAAGTGTCCC
ACCTTTCCACATTTGTTTTCTCCTGTCCTTATCATTTCTCCTCCATTCCT
AGTCTGCTGTAAGCATCCCGTTTCCTCCGCTACCAGAAAGGCATAAGGAA
GACATCATTGGTATCTTATGCCTTTGCCCCGCTCTAGGGGCATTTGGCTC
ACAGAGGGAGAGAATGATCTTAGCTTTCTGATTCTGCTTCTCATGCCTGC
ACGCATGCTCTTCCTGGGCCTCTACAAGCAAATCTTTAAGTTCTCTACCC
TTCCTACTTTCTAACTTTAGCAACTTTTTAAAAATGTCTGGCCAACTGTT
GGTCATAAAATGTAACTTTAGCATCCCATGATTAAAGGAGTCCTCCAGTT
TTAATTCTGACTATTTTCTCATTTGATCCTTTAAGAATTCATCTGGCGTG
GAGGGGGCTGGACAGATATCCTTATGACCTATTACTCCGTCACCTCTTTT
TCTACCCATTTTTCTCCATCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_i08.g1 MSMg01no303_i08.g1 CHROMAT_FILE:
MSMg01no303_i08.g1 PHD_FILE: MSMg01no303_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:27 2005
         (238 letters)



>mm_chr15_76680217_76680854
          Length = 638

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcttcctccataggaactgtcattaaaggctctcatgaggtgtcagtgaaaaataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atttcttcctccataggaactgtcattaaaggctctcatgaggtgtcagtgaaaaataga 376

                                                                       
Query: 61  ccctttgattcccttccccaaattgtcattaaaatgtatgaggcattccttctcaaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccctttgattcccttccccaaattgtcattaaaatgtatgaggcattccttctcaaagtg 316

                                                                       
Query: 121 tcccacctttccacatttgttttctcctgtccttatcatttctcctccattcctagtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcccacctttccacatttgttttctcctgtccttatcatttctcctccattcctagtctg 256

                                                                  
Query: 181 ctgtaagcatcccgtttcctccgctaccagaaaggcataaggaagacatcattgg 235
           ||||||||||||||   |||||||||||||||||| |||||||||||||||||||
Sbjct: 255 ctgtaagcatcccggggcctccgctaccagaaaggtataaggaagacatcattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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