Query= MSMg01no304_m14.b1 MSMg01no304_m14.b1 CHROMAT_FILE:
MSMg01no304_m14.b1 PHD_FILE: MSMg01no304_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:53 2005
(677 letters)
>mm_chr15_37573484_37574570
Length = 1087
Score = 1141 bits (590), Expect = 0.0
Identities = 661/690 (95%), Gaps = 16/690 (2%)
Strand = Plus / Minus
Query: 1 tgtatggcaaacaagacaattccaacaaagacgtcctaaaagacagaaaatagcctccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tgtatggcaaacaagacaattccaacaaagacgtcctaaaagacagaaaatagcctccca 828
Query: 61 agtctcttagattcctgttctgcattttagcagaaggatccaaacagactagcattgaat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 827 agtctcttagattcctgttctgcattttagcagagggatccaaacagactagcattgaat 768
Query: 121 accatataaaaatagtagagggcaaaatagaaaacagagactcattctcctaccgcagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 accatataaaaatagtagagggcaaaatagaaaacagagactcattctcctaccgcagcc 708
Query: 181 acagcag-tcttcctgccttcctgctagctgctgctgggtgctgtttcatcttac----- 234
||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acagc-gttcttcctgccttcctgctagctgctgctgggtgctgtttcatcttacccagt 649
Query: 235 ccacagttacatctctatttcctcttctgaatacccttttcaacatttacacagaatttg 294
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 648 ccacagttacatctctatttcctcttctgaatacccttttcaacattttcacagaatttg 589
Query: 295 ggacttggtggtagggaatttgaatggcacctgcaagggtggggctcaatccagcatttg 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 588 ggacttggtggtagggaatttgaatggcacctgcaagggtggggctcaatccagcacttg 529
Query: 355 aaacaaggggctcaaaacacatacatctgcttctgtttaagcataaatttccacgttgaa 414
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 528 aaacaaggggcccaaaacacatacatctgcttctgtttaagcgtaaatttccacgttgaa 469
Query: 415 aagattcagaaaggtccatagtgaaatgagatactaccttataaactgttagttgcccag 474
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 468 aagattcagaaaggtccatagtgaaatgagaaactaccttataaactgttagttgcccag 409
Query: 475 caacctcc-atcaacctccccattgagactccgcctcttacttcctcctccctctactgg 533
|||||||| | |||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct: 408 caacctccga-caacctccccatcgagactccgcctcttacttcctcctccttctattgg 350
Query: 534 tcctttcc-cctacgtg-----ggtcaccaggtcacttgtcagtgtttcttggcatagca 587
|||||||| ||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tcctttcctcctccttctatttggtcaccaggtcacttgtcagtgtttcttggcatagca 290
Query: 588 cgggacacagctgtaatttaagaagaatttttataaatccaaggctgcagtgtgcccagg 647
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 289 cgggacacagctgtaatttaagaagaatttt-ataaatccaagcctgcagtgtgcccagg 231
Query: 648 gcaggagagaaggttgatcgttggcctgca 677
||||||||||||||||||||||||||||||
Sbjct: 230 gcaggagagaaggttgatcgttggcctgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1087
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1077
Effective search space: 718359
Effective search space used: 718359
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_m14.g1 MSMg01no304_m14.g1 CHROMAT_FILE:
MSMg01no304_m14.g1 PHD_FILE: MSMg01no304_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:54 2005
(656 letters)
>mm_chr15_37418625_37419678
Length = 1054
Score = 1143 bits (591), Expect = 0.0
Identities = 639/655 (97%), Gaps = 2/655 (0%)
Strand = Plus / Plus
Query: 2 gaaatcaggtcattattttgagggataaacactttttccttattgagccattttgctggt 61
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 gaaatcaggccattattttgagggataaacactttt-ccttattgagccattttgctggt 260
Query: 62 cctaaataggttgctgatcccattaatgctatccacctgagaatgaggaacaacagaacc 121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaataggttgctga-cccattaatgctatccacctgagaatgaggaacaacagaacc 319
Query: 122 ttctataagaataagggccatggagtcagaatctcaccagtgtgtttccagccatcttct 181
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 ttctataagaataagggccatggagtcagaatctcaccagcgtgtttccagccatcttct 379
Query: 182 ctgaactctcaggaccttcccaaggcctgtaatttccctttaggttcttagaatcacatc 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 ctgaactctcaggaccttcccaaggcctgtaatttccctttaggttcttagaatcacacc 439
Query: 242 agaaccttgccaatacctttgatttggcctcagccagtttaagaagatgtttcttgctca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaccttgccaatacctttgatttggcctcagccagtttaagaagatgtttcttgctca 499
Query: 302 aatacaaaggcactaatacaattagcttgactaatacctcaaaaatcgaaacagaccttg 361
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 500 aatacaaaggcactaatacaattagcctgactaacacctcaaaaatcgaaacagaccttg 559
Query: 362 gacatgccagatcagttgatacagtcatttacaacttttaaatgagtgttttctgtatgc 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacatgccagatcagttgatacattcatttacaacttttaaatgagtgttttctgtatgc 619
Query: 422 aggagtgccttaaacgctgaaggaaaggatgttaaacaaaaaagacagagaccttgtctg 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 aggagtgccttaaacgctgaaggaaaggatgttaaacaaaaaagacagagaccttggctg 679
Query: 482 tataaagttttgtagtggccaaacattgtcaatgagctttctagcaatctcctgtctcac 541
| ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct: 680 tgtaaagttttgtagtggctaaaaattgtcaatgagctttctggcaatctcctgtctcac 739
Query: 542 aaaaggcatcatttgcttaatgatgatagatacagaaagatagtgcccagtgctagcctg 601
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaaagcatcatttgcttaatgatgatagatacagaaagatagtgcccagtgctagcctg 799
Query: 602 ggaggatctaagtcagtttagggtttccctgaagggtccctcgtggtctggagaa 656
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 800 ggaggacctaagtcagtttaggatttccctgaagggtccctcgtggtctggagaa 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1054
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1044
Effective search space: 674424
Effective search space used: 674424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
