BAC Information

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BAC

Clone NameMSMg01-305I15
Chromosome15 (Build37)
Map Location 20,758,361 - 20,758,753
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305I15.T7 (MSMg01no305_i15.b1)MSMg01-305I15.TJ (MSMg01no305_i15.g1)
ACCAG430473AG430474
length1,2861,298
length of high quality
(start - end)
414 (45 - 458)393 (73 - 465)
definitionCHROMAT_FILE: MSMg01no305_i15.b1 PHD_FILE: MSMg01no305_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:36 2005CHROMAT_FILE: MSMg01no305_i15.g1 PHD_FILE: MSMg01no305_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCCACGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCCGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAGGATCCTTAATCATCAAGGAAATGCAAATCAAAGCAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATGAAAACTTCAGATGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTATACAACCACTCTGGAAGTCAGTCTGGAGGGTCCTCAGA
AAATTGGACATAGTACTACCGGAGCATCCAGCAACACCTCTCCTGGGCAT
ATATCTAGAAGATGTACCAACCCCTAAGAAGGACACAAGCTCCACTATGT
TCATTTTTTCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCTTTTTTTTCCCCCCCCCCCCAATTGNAGTACCTCTTCACAAAAAA
GAAGGGGGGAGCTATTANAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAGG
AACCCACACAATATGTACTCACTGATAAGAGGATATTAACCCAGAAACTT
AGGATACCCAAGATATAAGATACAATTTGCTAAACTCATGAAACTCAAGA
AGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAAC
AAAACACCCATGGAATGAGTCACAGAGACAACATTTGGAGCTGTGATGAA
AGGATGGACCATCTAGTGATTGCCATATCCAGGGATCCATCCCATAATCA
GTTTCCAAATGCTGACACCATTGCATACAGTACCAAGATTTTGCTGAAAG
GACCCAGAAATACTTTTCTCTTGTGAGACAATCCCAGGGCCCAACAAACA
CAGAAGTGGATGCTCCCCAGCCGCTTTTGAATGGATCACAGGGCCCCCAA
TTTGAGAAGCTTGAGAAGCCCTCCACGGAATCAAGGGAAATGTACCCCTA
TTGGTGGAAACACAATTGAACTAACCAGGACCCCGAACTTTTGAATCCAC
CGGCCAGGTTACAAAGAGGGCTATTTGGTCTCACTGGAAAAAAGTCCCTT
GTATTTTTAATTTATATCCCCCCTACGGTGAATCCTGGCTAAATGAGGCA
TGGTGGTACTGAACTACCTCCCCATTTTATTTTTCTCCTCATTCTCTTTC
ATCCTCTTTCTGTTATATATCGATTGACTACGTTTT
NNNTTCAATGAGGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGGGGTCCGCTATTATCCCGAGGCTT
GAGTGAGGGGTCTTTCAGTTATCATGCTTTCAAACTGTCTTAAGGCAAAG
GAAGAATGGAAAAAGGAAGAGACTATACAAGATTGGGTAGCTGATATACA
CATTTAAAAATGTCAAGTAAGAAAAACCACAATAACTCAGAGGTTACGGT
ATCATGAAAGATGGAGTTAATTAACATTATAGAAAGAACATGTAGCTATA
TGTATGTATGTATGTGTGTGTAACTGATATATGTAATATATTGAGGTATC
TGGCAAATGGATATAATTAGACTTAAATGATCATAGTTGTTTTATTACAG
GTTTTTTGATGCAGATAACGCTGGGTTTGAGATATTTATTACTTATATGT
AGTTATTTTTTTTCCCCCCCCCCNANNGNTTACACCCCTTCAAAAAAAAA
GGGGGCTTCNGGGGATGTGAAGTCAATCTCATCTGCTTTACTTCTTCCTT
CATTTGTTTCCCTGATAAAATTGTTTATAAATGATGGTACTCTATCTTGG
CAGGAGTTGAGTGAAAGAAATGGGACAGTGTATTTCATCCCTAAGATGAG
GGGTTGATGTGTTAAAATCCCTAATATGCTTCTGTTAATTTACTCTTCAT
AGGAAGAAAAATTCAGAGAGGATATTTTGTATTTGTTCTCAATTTCATTT
TTGAACTTTAGCTATGCTTGATTCTATTGGGCAATATTTAAATGAGGAAA
GAAAAAAATTCTCATAGAGATTAATACTTTACTGTATTGAAATTGAATGT
TATTTATCTTAGTAATATATTTGTGCATTTTAACCCCATGCATTTAATGT
TCTTAACCTTTCACCTACGATCAAGTATAGCCATGTACATTTGTTAAGTC
CTAAAGTAATTCTAACATGCAGTATACAATGGTTAAAATTTACCTGCATG
TATTGCCAAAAATAAATACGAGAAAATTTTTTTAAGGCTTTTTTTTTACT
AGGACAAAACCAAATTTGGGAAAAACACATGCCAAATTTTTCTTCATCCC
CCCCCCCCCTAATTTAAGGCAAATATAGTTCTTGGGTAGAAAAATTTTTT
AAATAAGGGAAAGGGTAACTTTTGTGGCGCGAATTTCGAGCTTAACCCCT
CCCCACAACATATTATTTCTAAAGCACCTCTATAAACAAAAAAATATACC
TTTCCGGGGAGCCGTGATAAATCATAAATTTCTTCTCGTTTACTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_i15.g1 MSMg01no305_i15.g1 CHROMAT_FILE:
MSMg01no305_i15.g1 PHD_FILE: MSMg01no305_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:36 2005
         (393 letters)



>mm_chr15_20758115_20758914
          Length = 800

 Score =  640 bits (331), Expect = 0.0
 Identities = 375/393 (95%), Gaps = 7/393 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggggtccgctattatcccgaggcttgagtgaggggtctttcagttatcatgctttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 639 ttgggggtccgctattatcccgaggcttgagtgaggggtctttcagttatcatgttttca 580

                                                                       
Query: 61  aactgtcttaaggcaaaggaagaatggaaaaaggaagagactatacaagattgggtagct 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 579 aactgtcttaaggcaaaggaagaatgggaaaaggaagagactatacaagattgggtagct 520

                                                                       
Query: 121 gat-atacacatttaaaaatgtcaagtaagaaaaaccacaataactcagaggttacggta 179
           ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 519 gatcaaacacatttaaaaatgtcaagtaagaaaaaccacaataactcagaggttactgta 460

                                                                       
Query: 180 tcatgaaagatggagttaattaacattatagaaagaacatgtagctatatgtatgtatgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcatgaaagatggagttaattaacattatagaaagaacatgtagctatatgtatgtatgt 400

                                                                       
Query: 240 a------tgtgtgtgtaactgatatatgtaatatattgaggtatctggcaaatggatata 293
           |      |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgtgtgtgtgtgtgtaactgatatatgtaatatattgaggtatctggcaaatggatata 340

                                                                       
Query: 294 attagacttaaatgatcatagttgttttattacaggttttttgatgcagataacgctggg 353
           |||||||||||||||||||| |||||||||||||||  |   ||||||||||||| ||||
Sbjct: 339 attagacttaaatgatcatacttgttttattacaggcataaagatgcagataacgttggg 280

                                            
Query: 354 tttgagatatttattacttatatgtagttattt 386
           |||||||||||||||||||||||||||||||||
Sbjct: 279 tttgagatatttattacttatatgtagttattt 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 800
Length adjustment: 9
Effective length of query: 384
Effective length of database: 791
Effective search space:   303744
Effective search space used:   303744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)