BAC Information

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BAC

Clone NameMSMg01-305K21
Chromosome15 (Build37)
Map Location 27,425,301 - 27,425,679
singlet/doubletsinglet
Overlap geneAnk
Upstream geneFbxl7, LOC622531, LOC625311
Downstream geneBC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305K21.T7 (MSMg01no305_k21.b1)MSMg01-305K21.TJ (MSMg01no305_k21.g1)
ACCAG430569AG430570
length1,2511,267
length of high quality
(start - end)
118 (511 - 628)381 (75 - 455)
definitionCHROMAT_FILE: MSMg01no305_k21.b1 PHD_FILE: MSMg01no305_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:55 2005CHROMAT_FILE: MSMg01no305_k21.g1 PHD_FILE: MSMg01no305_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCCGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCNAGTGCGACACTTGGGGGTTGGATCAGGTGAGTAGGACTCATGGCG
ATATGATCCAAGGGTGACTCGCAAGTACTTGAACCCATGGCCTTTAGGGT
ATATGCTTAGCATTGATGAAAACACCTGCACAGAGGTGGCTAGCTAAAAT
TGCTGGCCCTCCATGTGTGAAAGAAAAATAACGAGGCTCCTTTCTGGGGG
CCATGCCCTTGTGAGTCCAAGGATCCTTGCACCACACAACGCTGCTTCAT
AGATCCTTGTGACCACAGCGGCCACTCATAAAGCCAGACCGTTGCTGGAA
GGCATGTGCTTACCGGTCACACATAAAAGCCACAGCTTTAAGATCAGATA
ATGTCACAAGTCTTCTGGTTACGCCTGTTTTCTGTACAAAAGAAGTGGCG
AATTGTTTTATCCCCCCCCCCACAGATAAATTGGTTGCAAAGAAAAAAAG
GGCGGAGGAGTGAACACTCTCTCCTCCCTCCTAGGCTCCTCCCCTCTTCT
CCTCCCCCATCTCTTCCCTTCCCCTCTCCTTTCTTCCCCTCCTCTCATCT
TTTTCTTATCCTTTCCTTTCTCCTCGGTTTCTGACTACACTTCCCTTCTC
CCTTTTCCTTCCCCCTCCCCTTCTCCTTCCCCCTCATTCCCCCCTCCTTT
CCATTTCTTTTCCCCTCTGACATACAGTCTCACTTTATAGTCCAAGGATG
ATCTGCAACTCACTCTGCAGCCCAGGCTGGCCTCCTCTTGCTTTATCTTA
AATTACGACTGAGACCCCCTGCCCCTGGATTGAGGGTTCCTTTCTGTTTC
TGACCAGTTTTCTCCTGACTTCTTGCTAAACATGTTACGGCCCTGCTTCC
ACACCGTGGGAACTTGACCCTAAGACGGGCTCACTTGCTGTCCACTTGAG
CCTGACAGAATGGTCCATCTTATAAAGGGCGCCTAGCGCCTTCCTGTGTG
GAACGGAAAAATACCCGAATGCGACTATTCTCTCCACACCCCCCCGATTG
ACTGGTTTAAAACCGAACATCCCCTTCAAAAAAAAATAATTTTTCCACCG
TCCCAATTATCCCCAAAAATTTTTGCTCTCGTTCCCCAAAAAACCTTCTC
TGGGAGGGGACAATTCTCTTCTTCAAGTAAATTGTCCACCCACTCCATCC
CCACTTTCTTTCGTGCGCCATGGAATTCAATTTTTCTTAAACGAATATAG
T
NNNCCACATCACGGNAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTGGGATATCTGTTGGGGTAACTG
GGTCGAAATCTAATCAAGCGTCACTGCTAAGGTTTTAACTGACTCATTTT
TTATTTGGGTTATTGTTTAAAGAGAGAGCAATGTTTACAAAAACAGAGTT
CCTTGGTGCTTGGTCTAGGGGTACCCTTTGTCTCATGTGCATAGTGATTT
ATTTGTTCTATGGCCAACACATCTCAACAGAGGACAGGAGGGGCTTGGCT
GGGTTTTTACCACACCTGCAGTTTGTGTGTACTGGCAGAAAAATTCACAC
AGAGGAGTGGTTTTGTTATGCTCATTTAGTGACTTATTGCACAATTAAAT
TATTTCTAAAATTCCCTTTTTCAGAAAGTGTGCAAAAGGTTTGGTAGCCA
AATTTTTTTTTTCCCCCCCCCCCTGAGNAAAACCCCTCCCACAAAAAAAA
GGGGGTGCCTTTTCCTTCCNTGTCCCTCTCGGGTCCCCTGGGTCGTGGCN
CAGGCCAGCTTGTCTCTAGGAAGGGCATGGTTTGACACAGCATGATTTTC
TGGAGCTGGAGAGGATTGTCGGTGAGTATGATCCTGGCAGGAGACAAAGA
GAGTGGCTGGTTAAGCAGAAAGACAAACAGGAACATAATGACTAGCCAGG
AGAGACATCTGCCAGAACCCTAGCATCCAAACACAGGATGCACAAGCAGA
TGCCCATTAAGGAAGAGTGTGGGCTGTGTGCTCTTCTGACCACCTAACAC
ACAAAGGGGGCCAATGAAGATTAATGACCCAGCTGTAAAAATGATCTTCA
AGTCAATAGTGCTGGACCCGAGGAGCGTTTTAGCATGCACCAAGCTGGCT
CTGGGTGTGGACTGTCCCAGTTAACAAAGGTTCCCTTTAGTGAAGCGCAC
TCTTGCCAGGGCCCGAATTATTGTAATGACTTGTACAACTTTCATCTCTA
CTGCGCACTATCTCCTTTAACCCCTCACGGATTAAAAAGTTACAACCTTT
TTAAATTTAAAAAATCCGGCCAAACCCAAATTTTACCACACAATAATTTC
TCATTAAAAATTGTTCTCCCCAAAAAAAAATTTTTTTTGAAACTCCTAAA
GGGCCATAAACTCCTCTTTGGCGCTTTCATTCCGCGGTCTTCCCACTCCC
AACAACACCAAAACAACCTCTCCTCTTTTCTTTCCTTTAAAACACACTTT
CCTTTTCTTCATCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_k21.g1 MSMg01no305_k21.g1 CHROMAT_FILE:
MSMg01no305_k21.g1 PHD_FILE: MSMg01no305_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:55 2005
         (381 letters)



>mm_chr15_27425101_27425881
          Length = 781

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgggatatctgttggggtaactgggtcgaaatctaatcaagcgtcactgctaaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgggatatctgttggggtaactgggtcgaaatctaatcaagcgtcactgctaaggtt 260

                                                                       
Query: 61  ttaactgactcattttttatttgggttattgtttaaagagagagcaatgtttacaaaaac 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttaactgactcattttttatttgggttattgtttaaagagagcgcaatgtttacaaaaac 320

                                                                       
Query: 121 agagttccttggtgcttggtctaggggtaccctttgtctcatgtgcatagtgatttattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagttccttggtgcttggtctaggggtaccctttgtctcatgtgcatagtgatttattt 380

                                                                       
Query: 181 gttctatggccaacacatctcaacagaggacaggaggggcttggctgggtttttaccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctatggccaacacatctcaacagaggacaggaggggcttggctgggtttttaccaca 440

                                                                       
Query: 241 cctgcagtttgtgtgtactggcagaaaaattcacacagaggagtggttttgttatgctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcagtttgtgtgtactggcagaaaaattcacacagaggagtggttttgttatgctca 500

                                                                       
Query: 301 tttagtgacttattgcacaattaaattatttctaaaattccctttttcagaaagtgtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagtgacttattgcacaattaaattatttctaaaattccctttttcagaaagtgtgca 560

                              
Query: 361 aaaggtttggtagccaaat 379
           |||||||||||||||||||
Sbjct: 561 aaaggtttggtagccaaat 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)