Query= MSMg01no306_f07.b1 MSMg01no306_f07.b1 CHROMAT_FILE:
MSMg01no306_f07.b1 PHD_FILE: MSMg01no306_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:05 2005
(315 letters)
>mm_chr15_57370028_57370746
Length = 719
Score = 543 bits (281), Expect = e-159
Identities = 305/315 (96%), Gaps = 4/315 (1%)
Strand = Plus / Minus
Query: 5 gaattctactgtccttcgatgtgtgcctccttctccctgactc----aaggctgccctca 60
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 519 gaattctactgtccttagatgtgtgcctccttctccctgactcaaggaaggctgccctca 460
Query: 61 tcctagcttcatatataccgcttgataagtctgcacatgacagtttctgatcacgtcaat 120
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcctagcttcatagatagagcttgataagtctgcacatgacagtttctgatcacgtcaat 400
Query: 121 ccttaagtgaaccaacatgacatgacctaaaatgtctctaactggactaaaaatgggcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccttaagtgaaccaacatgacatgacctaaaatgtctctaactggactaaaaatgggcat 340
Query: 181 ttctaccacgtgctggaggtgactgaggattctgagcctcaggttgaggcttgaactctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttctaccacgtgctggaggtgactgaggattctgagcctcaggttgaggcttgaactctg 280
Query: 241 gaacagtgaggcagagggaatggagatttctgatgatggtgtttgtattaatccacttgg 300
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 gaacagtgaggcagagcgaatggagatttctgatgatggtggttgtattaatccacttgg 220
Query: 301 actgccacggctaaa 315
|||||||||||||||
Sbjct: 219 actgccacggctaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 719
Length adjustment: 9
Effective length of query: 306
Effective length of database: 710
Effective search space: 217260
Effective search space used: 217260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_f07.g1 MSMg01no306_f07.g1 CHROMAT_FILE:
MSMg01no306_f07.g1 PHD_FILE: MSMg01no306_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:05 2005
(540 letters)
>mm_chr15_57185114_57186053
Length = 940
Score = 872 bits (451), Expect = 0.0
Identities = 517/540 (95%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 1 actttgagttctataataataaaaaaaaaagaattacatacttctaatatacaatgtcac 60
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 203 actttgagttctataaaaat--aaaaaagagaattacatacttctaatatacaatgtcac 260
Query: 61 agggtaactatccccattccagaataagtggatagcaacataaacagaagtagcctggct 120
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtaactatccacattccaaaataagtggatagcaacataaacagaagtagcctggct 320
Query: 121 aaaataagacaaagaccctcaggacaaatactaagttctgtagtcccacaactggcacct 180
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aaaataagacaaagatcctcaggacaaatactaagttctgtagccccacaactggcacct 380
Query: 181 ggggcacatggtagttaacatttcaaaatacctatataaacatgctgtgtagcattccta 240
||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct: 381 ggggcacatggtagttagcatttcaaaaggcctatataaacatgctgtgtagcattgcta 440
Query: 241 gctacagcccaaatggccactctgctggctgcctcttcatgctacctatgacttcattta 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctacagcccacatggccactctgctggctgcctcttcatgctacctatgacttcattta 500
Query: 301 atctgtactacaggtacctccttacagatttggaattacccacaaagctccaagcactgc 360
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 atctgtattacaggtacctccttacagatttggaattacccacaaaactccaagcactgc 560
Query: 361 cctcttaggagctgtcttctgggacacaaatcctgccacactttgcctagatgtgcaggc 420
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 561 cctcttaggagctgtcttctgggagacaaatcctgccacactttgtctagatgtccaggc 620
Query: 421 tttctctganaattaggtggaagccaccatgaaactgtaattcaaacaatatgatgcctg 480
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tttctctgaaaattaggtggaagccaccatgaaactgtagttcaaacaatatgatgcctg 680
Query: 481 ctacaactgccacatgcacatggtgccaagatttttgagtaacatgagtaatatctgggt 540
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 681 ctacaactgccacatgcacatggcaccaagatttttgagcaacatgagtaatatctgggt 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
