Query= MSMg01no307_g22.b1 MSMg01no307_g22.b1 CHROMAT_FILE:
MSMg01no307_g22.b1 PHD_FILE: MSMg01no307_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:29 2005
(701 letters)
>mm_chr15_18343664_18344764
Length = 1101
Score = 1154 bits (597), Expect = 0.0
Identities = 651/669 (97%)
Strand = Plus / Plus
Query: 5 gaattcattttgaatctccagatgattgtaatcctgtgaattttgtaggtgccatgcaga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttgaatcaggagatgattgtaatcctgtgaattttgtaggtgccatgcaga 264
Query: 65 atttacaagactgaaacaactgtctactgaaagctcattaatttaactgttggcccccag 124
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 265 atttacaagactgaaagaactgtctcctgtaagctcattaatttaactgttggcccccag 324
Query: 125 ttataattactgtttagagagattagtgaacttttatgtgctccagccctgataaacaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttataattactgtttagagagattagtgaacttttatgtgctccagccctgataaacaaa 384
Query: 185 gtgtatcactagtgttgaacctcaaggtcttgatgtctcacctctcatagtgagagattt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtatcactagtgttgaacctcaaggtcttgatgtctcacctctcatagtgagagattt 444
Query: 245 agattctttaaaaacacaaaattgctataggaacatgtttttgttttaattccaggtatg 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 agattctttaaaaacacaaaattgccataggaacatgtttttgttttaattccaggtatg 504
Query: 305 gaatatcatattgcttcagattgtctacagcagctgacttgtgctctaacaggggtgtga 364
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 505 gaatatcagattgcttcagattatccacagcagctgacttgtgctctaacaggggtgtga 564
Query: 365 ttttcccagctgccgctaatctctgcaaatgtaagatgtttagaattcagggaatgcttg 424
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 ttttcccagctgctgctaatctctgcaaatgtaagatgtttagaattcagggaatgattg 624
Query: 425 aaaaggtataaatactagaatcattactgctgttgcttcgcctccttctcctgttctgct 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 aaaaggtataaatactagaatcattactgctgttgcttctcctccttctcctgttctgct 684
Query: 485 tattgctgctgttgctatttcgttatatggtcttgtgcaaagggaggagaaaaaaagttg 544
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 tattgctgctgttgctatttcgttatgtggtcttgtgcaaagggaggagaaaaaaagttg 744
Query: 545 ggcatccaaacaggaagattaaacttgcctcaaggaactcactactcctagtcagcagga 604
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggcatccaaacaggaagatcaaacttgcctcaaggaactcactactcctagtcagcagga 804
Query: 605 agtactctaatgatatcaaagcctaatgaaatcatggtctaatgatacccctttagcctt 664
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 805 agtactctaatgatataaaagcctaatgaaatcacggtctaatgatacccctttagcctt 864
Query: 665 ctttgtctg 673
|||||||||
Sbjct: 865 ctttgtctg 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_g22.g1 MSMg01no307_g22.g1 CHROMAT_FILE:
MSMg01no307_g22.g1 PHD_FILE: MSMg01no307_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:29 2005
(671 letters)
>mm_chr15_18410441_18411514
Length = 1074
Score = 1011 bits (523), Expect = 0.0
Identities = 633/689 (91%), Gaps = 41/689 (5%)
Strand = Plus / Minus
Query: 1 agtgactgtacatgcagttggaggctacacaggagaacactagtatctgtctctctctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 agtgactgtacatgcagttggaggctacacaggagaacactagtatctgtctctctctga 761
Query: 61 aagactcacaccggaggacctatatgtcagaagcacattaacaagagaagagcaa--aca 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 760 aagactcacactggaggacctatatgtcagaagcacattaacaagagaagagcaaacaca 701
Query: 119 ctgatttaatgttaaatgtaacactgca-a-ccttcacagggaaaaggaagtccaaataa 176
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct: 700 ctgatttaatgttaaatgtaacac--cacagccttcacagggaaaaggaagtccaaataa 643
Query: 177 atagacaaaactatatctttttatgctaaggctgaagaagtacgggataatgttggcaag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atagacaaaactatatctttttatgctaaggctgaagaagtacgggataatgttggcaag 583
Query: 237 gtactgttgatcgttggtatgaattctaatgctactaaacttacaggatgctttatgcag 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtactgttgatcgttggaatgaattctaatgctactaaacttacaggatgctttatgcag 523
Query: 297 aatcttctctgtgtcttcagagataaggatccagtcttc---tgggtatgggacgacagc 353
| ||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||
Sbjct: 522 agtcttctctgtgtcttcagagagaaggatccagtcttcgtctgggtatgggatgagagc 463
Query: 354 atctttcatgggagggtctcctggcagcagtagatggagatcagagaattctttccaggt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atctttcatgggagggtctcctggcagcagtagatggagatcagagaattctttccaggt 403
Query: 414 tttt------aaaaaatttttaatattttttattacgtattttcctcaattacatttcca 467
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttttttttttaaa---tttttaatattttttattacgtattttcctcaattacatttcca 346
Query: 468 atggtatcacaaaagtcacccataaccttccc-cccactttcctacccacccattcccct 526
||| ||||| ||||||||| |||| ||| ||| |||||| |||||
Sbjct: 345 atgctatcaaaaaagtcacacataccct-cccacccact------cccac---------- 303
Query: 527 ttttttggccctggcattc----ccctgtactggggcatataaagtttgtgtgtccaatg 582
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct: 302 -tttttggccctggcgttcgttcccctgtactggggcatataaagtttgcaagtccaatg 244
Query: 583 ggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagctagagtc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagctagagtc 184
Query: 643 aagagctcctgggtactggttagttcata 671
||||||||| |||||||||||||||||||
Sbjct: 183 aagagctccggggtactggttagttcata 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space: 703304
Effective search space used: 703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
